Gene detail information of Glyur000060s00004743.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G63800.14.00E-87ubiquitin-conjugating enzyme 5
NRNP_001237603.13.44E-131ubiquitin carrier protein 4 [Glycine max]
COGYP_008797956.16.00E-16ubiquitin-conjugating enzyme E2-like protein [Candidatus Caldiarchaeum subterraneum]
Swissprottr|P42749|UBC5_ARATH3.00E-110Ubiquitin-conjugating enzyme E2 5
trEMBLtr|Q9SPB9|Q9SPB9_SOYBN1.00E-131Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA07G07540.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00060238459241913+


Gene family

Gene familysubfamily
Ubiquitin FamilyUBC


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10576UBE2H, UBC8 EC:2.3.2.23 Ubiquitin mediated proteolysis map04120


Gene Ontology

Not hits found.


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000060s00004743.1PF00179.21UQ_con91422.80E-38


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control39.682
SRR1783600control40.913
SRR1783602moderate drought stress34.438
SRR1811619moderate drought stress35.716

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain41.649
DRR006520Root Summer glycyrrhizin high producing strain41.895
DRR006521Root Winter glycyrrhizin high producing strain52.784
DRR006522Root Winter glycyrrhizin high producing strain51.992
DRR006523Root Summer glycyrrhizin low producing strain54.183
DRR006524Root Summer glycyrrhizin low producing strain57.462
DRR006525Leaf Summer glycyrrhizin high producing strain25.662
DRR006526Leaf Summer glycyrrhizin high producing strain25.032

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)85.943
SRR2868004Drought Stress(Tissue:root)119.315
SRR2967015Control (Tissue:root)110.465

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave39.576
SRR9715740Leave33.039
SRR9715741Leave49.350
SRR9715739Root16.355
SRR9715742Root33.450
SRR9715743Root32.985

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h113.843
SRR8749028MeJA induced 9h114.311
SRR8749029MeJA induced 9h121.346
SRR8749030Uninduced158.381
SRR8749031Uninduced176.343
SRR8749032Uninduced189.062

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root86.752
SRR8400027Control-Root91.211

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved