Gene detail information of Glyur000060s00004744.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G46020.20transcription regulatory protein SNF2, putative
NRXP_003548671.10PREDICTED: ATP-dependent helicase BRM-like [Glycine max]
COGYP_003955642.12.00E-64snf2/helicase domain-containing protein [Stigmatella aurantiaca DW4/3-1]
Swissprottr|Q6EVK6|BRM_ARATH0ATP-dependent helicase BRM
trEMBLtr|I1MKV5|I1MKV5_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA16G03950.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00060245761258221-


Gene family

Gene familysubfamily
Transcription Factors FamilySNF2


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0006355  regulation of transcription, DNA-templated


cellular_component

GO:0005634  nucleus


molecular_function

GO:0003677  DNA binding

GO:0005524  ATP binding

GO:0016818  hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000060s00004744.1PF08880.6QLQ4775103.50E-06
Glyur000060s00004744.1PF00176.18SNF2_N103913456.90E-70
Glyur000060s00004744.1PF00271.26Helicase_C140214774.40E-12


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control17.004
SRR1783600control17.237
SRR1783602moderate drought stress18.904
SRR1811619moderate drought stress18.993

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain12.846
DRR006520Root Summer glycyrrhizin high producing strain12.526
DRR006521Root Winter glycyrrhizin high producing strain10.600
DRR006522Root Winter glycyrrhizin high producing strain10.259
DRR006523Root Summer glycyrrhizin low producing strain15.606
DRR006524Root Summer glycyrrhizin low producing strain15.897
DRR006525Leaf Summer glycyrrhizin high producing strain11.940
DRR006526Leaf Summer glycyrrhizin high producing strain11.908

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)31.494
SRR2868004Drought Stress(Tissue:root)35.541
SRR2967015Control (Tissue:root)37.668

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave17.597
SRR9715740Leave16.562
SRR9715741Leave19.621
SRR9715739Root2.522
SRR9715742Root21.738
SRR9715743Root19.030

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h15.404
SRR8749028MeJA induced 9h26.792
SRR8749029MeJA induced 9h11.461
SRR8749030Uninduced10.948
SRR8749031Uninduced10.659
SRR8749032Uninduced8.081

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root30.215
SRR8400027Control-Root30.383

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved