Gene detail information of Glyur000060s00004745.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G52470.1 | 1.00E-80 | fibrillarin 1 |
| NR | XP_011030166.1 | 2.88E-116 | PREDICTED: probable mediator of RNA polymerase II transcription subunit 36b isoform X3 [Populus euphratica] |
| COG | YP_003858755.1 | 5.00E-53 | rRNA 2'-O-methyltransferase fibrillarin [Ignisphaera aggregans DSM 17230] |
| Swissprot | tr|Q9FEF8|MD36B_ARATH | 2.00E-111 | Probable mediator of RNA polymerase II transcription subunit 36b |
| trEMBL | tr|R0GMR7|R0GMR7_9BRAS | 1.00E-110 | Uncharacterized protein {ECO:0000313|EMBL:EOA13620.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00060 | 260051 | 262718 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K14563 | NOP1, FBL | EC:2.1.1.- | Ribosome biogenesis in eukaryotes | map03008 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000060s00004745.1 | PF01269.12 | Fibrillarin | 72 | 230 | 1.80E-76 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.005 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.042 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.194 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.253 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.813 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.791 |
| SRR2967015 | Control (Tissue:root) | 0.367 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.043 |
| SRR9715740 | Leave | 0.064 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.526 |
| SRR9715743 | Root | 0.851 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.410 |
| SRR8749028 | MeJA induced 9h | 0.927 |
| SRR8749029 | MeJA induced 9h | 1.263 |
| SRR8749030 | Uninduced | 0.074 |
| SRR8749031 | Uninduced | 0.094 |
| SRR8749032 | Uninduced | 0.261 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.303 |
| SRR8400027 | Control-Root | 0.201 |