Gene detail information of Glyur000060s00004758.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G61415.2 | 1.00E-104 | SKP1-like 21 |
| NR | XP_007135087.1 | 0 | hypothetical protein PHAVU_010G099600g [Phaseolus vulgaris] |
| Swissprot | tr|Q8LF97|ASK21_ARATH | 7.00E-150 | SKP1-like protein 21 |
| trEMBL | tr|V7AS95|V7AS95_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW07081.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00060 | 305725 | 311461 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | SKP1 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000060s00004758.1 | PF01466.14 | Skp1 | 91 | 144 | 6.60E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.220 |
| SRR1783600 | control | 3.319 |
| SRR1783602 | moderate drought stress | 3.961 |
| SRR1811619 | moderate drought stress | 3.901 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.130 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.961 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.482 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.462 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.575 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.462 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.611 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.447 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 7.832 |
| SRR2868004 | Drought Stress(Tissue:root) | 8.086 |
| SRR2967015 | Control (Tissue:root) | 7.822 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 16.268 |
| SRR9715740 | Leave | 17.623 |
| SRR9715741 | Leave | 18.858 |
| SRR9715739 | Root | 0.769 |
| SRR9715742 | Root | 2.868 |
| SRR9715743 | Root | 2.288 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.951 |
| SRR8749028 | MeJA induced 9h | 4.479 |
| SRR8749029 | MeJA induced 9h | 3.474 |
| SRR8749030 | Uninduced | 4.777 |
| SRR8749031 | Uninduced | 0.945 |
| SRR8749032 | Uninduced | 0.945 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 9.436 |
| SRR8400027 | Control-Root | 8.489 |