Gene detail information of Glyur000060s00004782.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G61350.1 | 7.00E-100 | SKP1 interacting partner 4 |
| NR | XP_004510793.1 | 0 | PREDICTED: F-box/kelch-repeat protein SKIP4-like isoform X1 [Cicer arietinum] |
| COG | YP_001818727.1 | 1.00E-12 | metallophosphoesterase [Opitutus terrae PB90-1] |
| Swissprot | tr|Q9M2C9|SKIP4_ARATH | 9.00E-122 | F-box/kelch-repeat protein SKIP4 |
| trEMBL | tr|A0A072TN21|A0A072TN21_MEDTR | 0 | SKP1 interacting partner 4 {ECO:0000313|EMBL:KEH18864.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00060 | 442328 | 445596 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000060s00004782.1 | PF00646.28 | F-box | 50 | 86 | 1.50E-05 |
| Glyur000060s00004782.1 | PF01344.20 | Kelch_1 | 142 | 187 | 2.20E-05 |
| Glyur000060s00004782.1 | PF01344.20 | Kelch_1 | 190 | 231 | 2.30E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.630 |
| SRR1783600 | control | 3.570 |
| SRR1783602 | moderate drought stress | 6.033 |
| SRR1811619 | moderate drought stress | 5.975 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.794 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.982 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 8.196 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 8.171 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.249 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.078 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.020 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.043 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 10.603 |
| SRR2868004 | Drought Stress(Tissue:root) | 12.764 |
| SRR2967015 | Control (Tissue:root) | 13.279 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 3.908 |
| SRR9715740 | Leave | 5.179 |
| SRR9715741 | Leave | 4.878 |
| SRR9715739 | Root | 7.706 |
| SRR9715742 | Root | 5.255 |
| SRR9715743 | Root | 7.080 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.999 |
| SRR8749028 | MeJA induced 9h | 6.393 |
| SRR8749029 | MeJA induced 9h | 4.647 |
| SRR8749030 | Uninduced | 3.393 |
| SRR8749031 | Uninduced | 4.149 |
| SRR8749032 | Uninduced | 5.609 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 8.958 |
| SRR8400027 | Control-Root | 9.162 |