Gene detail information of Glyur000061s00006533.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G29080.1 | 1.00E-75 | phytochrome-associated protein 2 |
| NR | XP_003630761.1 | 7.31E-152 | Auxin-responsive protein (Aux/IAA) [Medicago truncatula] |
| Swissprot | tr|Q9ZSY8|IAA27_ARATH | 3.00E-93 | Auxin-responsive protein IAA27 |
| trEMBL | tr|G7L869|G7L869_MEDTR | 3.00E-152 | Auxin-induced protein {ECO:0000256|RuleBase:RU004549} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00061 | 177178 | 180267 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | AUX/IAA |
| EAR motif-containing Proteins | AUX/IAA |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000061s00006533.1 | PF02309.11 | AUX_IAA | 47 | 353 | 4.80E-75 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 20.633 |
| SRR1783600 | control | 20.733 |
| SRR1783602 | moderate drought stress | 32.364 |
| SRR1811619 | moderate drought stress | 32.179 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 83.244 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 81.499 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.559 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.497 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 54.214 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 53.851 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.335 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.669 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 55.533 |
| SRR2868004 | Drought Stress(Tissue:root) | 49.974 |
| SRR2967015 | Control (Tissue:root) | 60.693 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 2.321 |
| SRR9715740 | Leave | 6.367 |
| SRR9715741 | Leave | 2.384 |
| SRR9715739 | Root | 17.057 |
| SRR9715742 | Root | 32.768 |
| SRR9715743 | Root | 25.915 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 19.822 |
| SRR8749028 | MeJA induced 9h | 0.348 |
| SRR8749029 | MeJA induced 9h | 4.292 |
| SRR8749030 | Uninduced | 0.120 |
| SRR8749031 | Uninduced | 0.076 |
| SRR8749032 | Uninduced | 0.724 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 77.808 |
| SRR8400027 | Control-Root | 92.771 |