Gene detail

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Gene detail information of Glyur000061s00006539.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G06880.2	1.00E-55	Transducin/WD40 repeat-like superfamily protein
NR	KEH21350.1	0	E3 ubiquitin-protein ligase LIN-like protein, putative [Medicago truncatula]
COG	YP_001957952.1	5.00E-12	hypothetical protein Aasi_0852 [Candidatus Amoebophilus asiaticus 5a2]
Swissprot	tr\|C6L7U1\|LIN1_LOTJA	0	Putative E3 ubiquitin-protein ligase LIN-1 {ECO:0000250\|UniProtKB:D1FP53}
trEMBL	tr\|A0A072U6A2\|A0A072U6A2_MEDTR	0	E3 ubiquitin-protein ligase LIN-like protein, putative {ECO:0000313\|EMBL:KEH21350.1}

Sequence

Transcript Sequence

>Glyur000061s00006539.1
ATGGGCACCGTAACCGTCACCACTCGAGCTCAGATCCTCCGCCACACCGCCGCATTCATCAGCGGCGTGCTCTCACATTCCGAACTCCGGCACCGCCTCATTGCCACTCTCCACCGTGAGANTCCAATCTCCAACCAAGCCACCCTAAAACAACTGAAGCTCGCCGCGGACACTCTCGAAAGCGCCATCTCATTCTCCGGCCCCGCNGTCCGTTCCTCCTCACTCTCCCTNGCCGAGAAGCTTCTCCTCCCTCTCCCCGAATACCCTGTCTCCTCCTTCCTCCTCTCCCTCATCCGCACCCTCTGCAACCGCCCCGACGAGTCCGCCATAAGCATCCTCCGAATCTTCCACTCGAACCCTTCCCTTGCCCGATCCGAAATCGCACCGGCTCTCTACGAGCGCCTCTTTTCTCTCCACCTCTTCCCTGTTTTCCAGTGGTTCCATGAGCAGAGAACGCGAATTTTGTCCTCCTCCGCTTCCGCGACATCGAGCCGCGGCGACACCTGTGACGGTGACTACTCGGTTTCCGACGAGTCCGTGGTGCTGCCTTGGACGAAGTTGTTGTCGAGGATGAGCGAGGATCAGGCCTCGAAGCTGAGGGAGTTGGAGAGAGAGTACGGGGAGGTTCTGGATGAGAACTGCAGGGTTTTGGCGGTGTATTTTAAAGAGGTTTTGGTGAATAGAGATGGAGATGAGTCAATTAGTCCACCGTTTTTGATATTGAAGAGCGCTGCAGAAGGTGAGAGTGGGGATTATTACAGAAAGGAGGAAATGCCAATGCCTGTGTTGGAGAACGGACGGTATAATCCAATGTGGTCCGAAAGGGATGCATCTATTGAATTTTTGAGCAGCAGTTCCAGNGGCAGATCTTCCCACGCACCATTATATCCTCAGAGAGTCTCTCCCAGAGTCCTCAAACCCCAAAAATCTACAAAATATTGGGCAACACCAGTCTATTTAAACTCAGCCGCCGAAACTCAATTTTCTTTAAATGAGAATTTGCTTTGTTCGTCTTCAGATTCTGAAGCAGAAAATGAGGAAAAGGACAAAAATACTGCATTGTTGGAGCCTCGACAAAGCCAAACCCAAGAACAAATGCAGACCATCTTCAAAGAATCCAGGGGCTCCCCAGATTATCCTATGGCAGACTACAATAAACCATCGCATGGAAGTGGGAAGCAAACATCTCCCAAAGACTTTGTCTGTCCAATAACCAGTAACATATTTGATGATCCAGTGACTCTTGAGACAGGTCAGACATATGAACGTAAAGCTATCGAGGAATGGTTCAATAGAGGGAACTTAACTTGTCCTATCACTCGCCAGAAGCTGCAAAACACCCATCTACCTAAGACAAATTATGTGCTCAAACGACTAATTGCTAGCTGGAAAGAACGCAACCCCAGTTCTGTCCTGTCACCAACTGAGAGTCTATANGAGGATACAGAAGCAGTAGTGAAGACAACAATGCCTTCCACTTCTCCTGATAGTGTCATAANACAGGCCACCGTTGATGGGATGATTAGTGAGTTACGCTGTGCAATCAATAACCTGTATATGTCAGATATTCTCGAGGAATCTGAAATGGCTGTGCTTCAAATTGAGAAGTTGTGGAGAGGAGGGAACCTGGGAGTGGACATCCATAGCATGCTATCAAAACCTGCAATAATTAATGGGTTTGTGGAGATCCTTTTCAACTCTGTTGAGCCCCAGGTGCTACAAGCATCGGTTTTCCTTCTGGCCGAGATGGGCTCCAGAGACAATGCTGTTATGCAGACCCTCACGCGTGTGGACACTGATGTGGAATGTATAATGGCTCTTTTCAAGAAAGGGTTGACAGAGGCTGTTGTGCTATTGTATCTCCTAAACCCTTCAGCTGTGGCTCTTACAGAGATGGCCACAGTGGATTCTCTNGTAACAGTTTTCGATAAGAAAGAGGAAGACTTGGTTAAGATGTGTTTAAAGCCCAAAACAGCTGCAGTGCTTTTACTGGCACAGATTATTGGAAGCAGTGAAGAGATAATTGCATCTTNGGTTGTCAAGACTCTGTTCTCTGGAAAAGCAATTGAAGCAGTTGTCGACAGTTTGGGAGCTGAGTGGGCAGAGGAGAGGATTGCTGCAGTGGAGATCTTATTGAGATGCATGCAAGAGGATGGGGCTTGCAGGAAANCCATTGCTGATAAAGCAGAGCTGTCTCCTATTTTGGATAGCTTCATCAGTGCAACTGATGGAGAGCGTTTTACGATTGTTAAATTTTTCTCTGAACTAACAGCCCTTCAAGACCAATGTCCAGTCATGGCTGGCCTCTTACTCCAACTTGATCTTCTGGTCGAACCAAGAAAAATGAGCATATACCGTGAAGAGGCAATAGATACTCTTATTTCATGCCTGAGAAACTCAGATTTCCCCGCTACCCAATTAGCAGCNGCTGATACAATCATGTCACTACATGGGAGGTTCAACTTCTTTGGAAAGCCTCTTATCAGAGAAGTACTTCTTAAACGTNCAGGTATTGACAAAAGTTCCAGAAGGGATGATCAGGTGGATCAGATCAGCAACTTCTTCCCAGAAATCGAAATAACTCCAGAAGAAGAGAAGGCAGCAGATGATTGGGAAAGAAAAATTGCATCTGTTCTAGTTAGCCACGAGTTTGGTATAATTTTTGAAGCTTTAGCAGATGGCATNAAGAGCCGAATTCCAGAACTACGTTCAGCATGCTTTATATCAGCTACGTGGCTCATATCCATGTTGACCATTCTACCAGATACAGGGATACAAGGAGCAGCCCGTGTCTGTTTGCTAAAGCAGCTCATTACTAAATTAAATTCTTCTAAGGAAGTAGAAGACANAATCCTTTCTATGCTTGCTCTCAATAGCTTTCTCCATTTCTCTGATGGCCTACGTGATCTAACCTTTTCCTACACTAAGGATATCTTAAAAGGTTTGAGAGAGCTAAAGAGATTCTCTCCCTTGGCATCTGAAATGCTGAAAGTTCTGGTTGAAGACAACGAGTCTAAAGCAGATATTTGGATACATAAAGAGCTAATCCAAGTAGATTGCAGCGAAAATGGAGGAGTGTTGTCTGTCATTTGCCTTAAGGATAAATTTTTTTCAGGACATACAGATGGCAGCATTAAGGTGTGGACATTAAAAGATAGCTTATTACTTCTGTTGCAAGAGATCCAAGAACATACTAAGGCTGTGACAAGCTTGGCGATTTCAGAATCTGGTGACAGACTATACAGTGGTTCACTTGACCGAACTGCAAAGATCTGGTGTATTGGAAAGGCAGCAATACATTGTGAGCAGGTGCATGATATGAAGGACCAGATTCATAATTTAGTTGTAACCAATAGCATAGCNTGTTTCATTCCGCAGGGAAGTGGTGTCAAGGTTCAATCACTGAATGGAGAATCAAAGTTGTTAAATTCTAATAAATATGTGAAGTGCTTGGCTCATGCTCAAGGGAGATTATACTGTGGATGCCATGACAGTAGTGTTCAGGAGATACATTTGGCCAGTGGAGCAGTCAGTACAATTCAAAGTGGNTATAAAAAATTACTTGGGAAAGCAAATCCTATTCGTGCACTTCAAATTCATGGGGAACTTATGTATGCAGCTGGCTCTTCCTTGGATGGATCTGTTGTAAAGATATGGAACAATTCCAATTACGGTATGGTTGGGTCATTGCAAACTGGATCAGAAGTGCGGGCTATGGCAGTGAGTTCAGAATTAATTTATTTGGGGTGCAAGGGAGGTGCTGTAGAAATTTGGGATAAGAAGAAACACACTANAGTTGACACGTTACAGGTGGGGACGAATTGTAAGATAAATTGCATGGCTTTGGTTAACAATGAAGGAATTTTGGTGATTGGAACTTCAGATGGCCAAATTCAG

Protein Sequence

>Glyur000061s00006539.1
MGTVTVTTRAQILRHTAAFISGVLSHSELRHRLIATLHREXPISNQATLKQLKLAADTLESAISFSGPAVRSSSLSLAEKLLLPLPEYPVSSFLLSLIRTLCNRPDESAISILRIFHSNPSLARSEIAPALYERLFSLHLFPVFQWFHEQRTRILSSSASATSSRGDTCDGDYSVSDESVVLPWTKLLSRMSEDQASKLRELEREYGEVLDENCRVLAVYFKEVLVNRDGDESISPPFLILKSAAEGESGDYYRKEEMPMPVLENGRYNPMWSERDASIEFLSSSSXGRSSHAPLYPQRVSPRVLKPQKSTKYWATPVYLNSAAETQFSLNENLLCSSSDSEAENEEKDKNTALLEPRQSQTQEQMQTIFKESRGSPDYPMADYNKPSHGSGKQTSPKDFVCPITSNIFDDPVTLETGQTYERKAIEEWFNRGNLTCPITRQKLQNTHLPKTNYVLKRLIASWKERNPSSVLSPTESLXEDTEAVVKTTMPSTSPDSVIXQATVDGMISELRCAINNLYMSDILEESEMAVLQIEKLWRGGNLGVDIHSMLSKPAIINGFVEILFNSVEPQVLQASVFLLAEMGSRDNAVMQTLTRVDTDVECIMALFKKGLTEAVVLLYLLNPSAVALTEMATVDSLVTVFDKKEEDLVKMCLKPKTAAVLLLAQIIGSSEEIIASXVVKTLFSGKAIEAVVDSLGAEWAEERIAAVEILLRCMQEDGACRKXIADKAELSPILDSFISATDGERFTIVKFFSELTALQDQCPVMAGLLLQLDLLVEPRKMSIYREEAIDTLISCLRNSDFPATQLAAADTIMSLHGRFNFFGKPLIREVLLKRXGIDKSSRRDDQVDQISNFFPEIEITPEEEKAADDWERKIASVLVSHEFGIIFEALADGXKSRIPELRSACFISATWLISMLTILPDTGIQGAARVCLLKQLITKLNSSKEVEDXILSMLALNSFLHFSDGLRDLTFSYTKDILKGLRELKRFSPLASEMLKVLVEDNESKADIWIHKELIQVDCSENGGVLSVICLKDKFFSGHTDGSIKVWTLKDSLLLLLQEIQEHTKAVTSLAISESGDRLYSGSLDRTAKIWCIGKAAIHCEQVHDMKDQIHNLVVTNSIACFIPQGSGVKVQSLNGESKLLNSNKYVKCLAHAQGRLYCGCHDSSVQEIHLASGAVSTIQSGYKKLLGKANPIRALQIHGELMYAAGSSLDGSVVKIWNNSNYGMVGSLQTGSEVRAMAVSSELIYLGCKGGAVEIWDKKKHTXVDTLQVGTNCKINCMALVNNEGILVIGTSDGQIQ

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00061	244716	251677	+

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U_box

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0016567 protein ubiquitination

molecular_function GO:0004842 ubiquitin-protein transferase activity GO:0005488 binding GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000061s00006539.1	PF04564.10	U-box	397	467	1.20E-14
Glyur000061s00006539.1	PF00400.27	WD40	1058	1092	1.50E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.890
SRR1783600	control	0.837
SRR1783602	moderate drought stress	0.562
SRR1811619	moderate drought stress	0.559

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.771
DRR006520	Root Summer glycyrrhizin high producing strain	0.732
DRR006521	Root Winter glycyrrhizin high producing strain	0.257
DRR006522	Root Winter glycyrrhizin high producing strain	0.248
DRR006523	Root Summer glycyrrhizin low producing strain	0.793
DRR006524	Root Summer glycyrrhizin low producing strain	0.783
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.307
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.375

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.537
SRR2868004	Drought Stress(Tissue:root)	0.237
SRR2967015	Control (Tissue:root)	0.119

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.431
SRR9715740	Leave	0.445
SRR9715741	Leave	0.246
SRR9715739	Root	0.128
SRR9715742	Root	0.461
SRR9715743	Root	0.619

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.395
SRR8749028	MeJA induced 9h	1.766
SRR8749029	MeJA induced 9h	1.453
SRR8749030	Uninduced	0.008
SRR8749031	Uninduced	0.090
SRR8749032	Uninduced	0.102

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	1.114
SRR8400027	Control-Root	1.505