Gene detail information of Glyur000061s00006576.1 |
Functional Annotation
Database | Orthologs | E value | Annotation |
---|---|---|---|
TAIR | AT3G24503.1 | 4.00E-41 | aldehyde dehydrogenase 2C4 |
NR | KEH21358.1 | 4.33E-68 | NAD-dependent aldehyde dehydrogenase family protein [Medicago truncatula] |
COG | NP_103689.1 | 1.00E-30 | aldehyde dehydrogenase [Mesorhizobium loti MAFF303099] |
Swissprot | tr|Q56YU0|AL2C4_ARATH | 9.00E-48 | Aldehyde dehydrogenase family 2 member C4 |
trEMBL | tr|A0A072TWZ4|A0A072TWZ4_MEDTR | 2.00E-68 | NAD-dependent aldehyde dehydrogenase family protein {ECO:0000313|EMBL:KEH21358.1} |
Sequence
Transcript Sequence |
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Protein Sequence |
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Location information(JBrowse)
Scaffold | Start | End | Strand |
---|---|---|---|
Scaffold00061 | 424443 | 425595 | + |
Gene family
Gene family | subfamily |
---|---|
-- | -- |
KEGG pathway
KO | Enzyme | Enzyme ID | pathway | mapID |
---|---|---|---|---|
K12355 | REF1 | EC:1.2.1.68 | Phenylpropanoid biosynthesis | map00940 |
Gene Ontology
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Pfam domain
Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
---|---|---|---|---|---|
Glyur000061s00006576.1 | PF00171.17 | Aldedh | 40 | 141 | 1.80E-36 |
Expression pattern
SRA Experiment | Description | TPM |
---|---|---|
SRR1783599 | control | 10.824 |
SRR1783600 | control | 10.604 |
SRR1783602 | moderate drought stress | 9.411 |
SRR1811619 | moderate drought stress | 9.727 |
SRA Experiment | Description | TPM |
---|---|---|
DRR006519 | Root Summer glycyrrhizin high producing strain | 0.353 |
DRR006520 | Root Summer glycyrrhizin high producing strain | 0.235 |
DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.308 |
DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.413 |
SRA Experiment | Description | TPM |
---|---|---|
SRR2867873 | Salt Stress(Tissue:root) | 204.571 |
SRR2868004 | Drought Stress(Tissue:root) | 276.730 |
SRR2967015 | Control (Tissue:root) | 204.489 |
SRA Experiment | Description | TPM |
---|---|---|
SRR9715738 | Leave | 3.068 |
SRR9715740 | Leave | 2.583 |
SRR9715741 | Leave | 3.724 |
SRR9715739 | Root | 18.986 |
SRR9715742 | Root | 14.173 |
SRR9715743 | Root | 16.015 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8749027 | MeJA induced 9h | 227.896 |
SRR8749028 | MeJA induced 9h | 177.022 |
SRR8749029 | MeJA induced 9h | 402.515 |
SRR8749030 | Uninduced | 210.984 |
SRR8749031 | Uninduced | 444.873 |
SRR8749032 | Uninduced | 282.878 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8400026 | NaCl treatment-Root | 84.199 |
SRR8400027 | Control-Root | 92.163 |