Gene detail information of Glyur000062s00005461.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G19020.10chromomethylase 2
NRXP_004509555.10PREDICTED: DNA (cytosine-5)-methyltransferase CMT2-like [Cicer arietinum]
COGYP_004303443.11.00E-19DNA methylase [Polymorphum gilvum SL003B-26A1]
Swissprottr|Q94F87|CMT2_ARATH0DNA (cytosine-5)-methyltransferase CMT2
trEMBLtr|V7CDL5|V7CDL5_PHAVU0Cytosine-specific methyltransferase {ECO:0000256|RuleBase:RU000417}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold000625737570465-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00558DNMT1, dcm EC:2.1.1.37 Cysteine and methionine metabolism map00270
MicroRNAs in cancermap05206


Gene Ontology

biological_process

GO:0006306  DNA methylation


molecular_function

GO:0003677  DNA binding

GO:0003682  chromatin binding

GO:0008168  methyltransferase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000062s00005461.1PF01426.13BAH3424554.30E-11
Glyur000062s00005461.1PF00385.19Chromo6036571.70E-09
Glyur000062s00005461.1PF00145.12DNA_methylase6649991.80E-23


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control4.162
SRR1783600control4.155
SRR1783602moderate drought stress3.372
SRR1811619moderate drought stress3.526

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain3.540
DRR006520Root Summer glycyrrhizin high producing strain3.362
DRR006521Root Winter glycyrrhizin high producing strain1.021
DRR006522Root Winter glycyrrhizin high producing strain1.150
DRR006523Root Summer glycyrrhizin low producing strain2.506
DRR006524Root Summer glycyrrhizin low producing strain2.597
DRR006525Leaf Summer glycyrrhizin high producing strain2.162
DRR006526Leaf Summer glycyrrhizin high producing strain2.121

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)15.174
SRR2868004Drought Stress(Tissue:root)12.258
SRR2967015Control (Tissue:root)11.181

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave3.784
SRR9715740Leave1.860
SRR9715741Leave2.667
SRR9715739Root0.210
SRR9715742Root2.892
SRR9715743Root1.858

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h5.415
SRR8749028MeJA induced 9h6.804
SRR8749029MeJA induced 9h3.905
SRR8749030Uninduced0.866
SRR8749031Uninduced0.571
SRR8749032Uninduced1.393

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root13.789
SRR8400027Control-Root16.056

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved