Gene detail information of Glyur000062s00005466.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G64230.21.00E-54ubiquitin-conjugating enzyme 28
NRXP_011018976.12.81E-73PREDICTED: ubiquitin-conjugating enzyme E2 5B-like isoform X2 [Populus euphratica]
Swissprottr|P35135|UBC4_SOLLC2.00E-69Ubiquitin-conjugating enzyme E2-17 kDa
trEMBLtr|B9RIN0|B9RIN0_RICCO2.00E-70Ubiquitin-conjugating enzyme E2, putative {ECO:0000313|EMBL:EEF49002.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold000628459687629+


Gene family

Gene familysubfamily
Ubiquitin FamilyUBC


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K06689UBE2D, UBC4, UBC5 EC:2.3.2.23 Protein processing in endoplasmic reticulum map04141
Ubiquitin mediated proteolysismap04120
MAPK signaling pathway - flymap04013
Toll and Imd signaling pathwaymap04624


Gene Ontology

Not hits found.


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000062s00005466.1PF00179.21UQ_con5671.30E-19


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control277.741
SRR1783600control281.628
SRR1783602moderate drought stress464.273
SRR1811619moderate drought stress457.797

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain564.709
DRR006520Root Summer glycyrrhizin high producing strain557.279
DRR006521Root Winter glycyrrhizin high producing strain664.073
DRR006522Root Winter glycyrrhizin high producing strain647.573
DRR006523Root Summer glycyrrhizin low producing strain693.854
DRR006524Root Summer glycyrrhizin low producing strain702.007
DRR006525Leaf Summer glycyrrhizin high producing strain131.741
DRR006526Leaf Summer glycyrrhizin high producing strain128.497

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)208.306
SRR2868004Drought Stress(Tissue:root)268.136
SRR2967015Control (Tissue:root)277.868

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave189.384
SRR9715740Leave226.052
SRR9715741Leave246.041
SRR9715739Root371.443
SRR9715742Root375.765
SRR9715743Root355.609

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h327.055
SRR8749028MeJA induced 9h351.172
SRR8749029MeJA induced 9h410.570
SRR8749030Uninduced450.001
SRR8749031Uninduced373.123
SRR8749032Uninduced634.940

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root259.215
SRR8400027Control-Root233.485

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved