Gene detail

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Gene detail information of Glyur000062s00005473.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G79620.1	0	Leucine-rich repeat protein kinase family protein
NR	KEH20269.1	0	LRR receptor-like kinase [Medicago truncatula]
COG	YP_004775215.1	3.00E-36	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|Q9LT96\|Y5977_ARATH	7.00E-156	Probable leucine-rich repeat receptor-like protein kinase At5g49770 (Precursor)
trEMBL	tr\|A0A072TRX1\|A0A072TRX1_MEDTR	0	LRR receptor-like kinase {ECO:0000313\|EMBL:KEH20269.1}

Sequence

Transcript Sequence

>Glyur000062s00005473.1
GGAGTTTGGAGAGGGGAAAGTGAGAAAAAGACTATGATGGTGTTATGGGTAGTGGCAACATTTATTAGCTTCTAAGATAAGAAAAAATCAATAAAATTGAAGTAGGAAACAGACAAGTCAAGCTTTTTCTTCCTTTTTCCTTTGTGAAANCTGATGGTATTTTTTGAAAGCTCCCTCTTCCTCCTCCTCAACCTTGCAACACTTCTCTTTGCTGCTTGCTAGTTAGCTAGCATGTTACANGCAATGTATATCCTTTCTTCTTTACTTGAGGCAAATATTTTTGTCTGATCATACATTGTTTGTGCTATAATCAGCAATTGTCAAGCAGCTATAGATGATGAGAACTCTTTCTAACAACATGGCAATACTCAGTGTGTTGCTCTTTCTGGTATTCTTGTGGGCTGAAATTCATGTCATCTCTTCATTTACTGATCCTCAAGATGTTGCTGCACTTAGATCTTTAAAAGATATATGGCAAAATACACCACCCAGCTGGGACAAGTCAGATGACCCCTGTGGAGCACCCTGGGAAGGAGTGACCTGCAACAAATCCAGGGTTACTTCATTGGGACTGTCAACCATGGGCCTGAAGGGTAAATTAAGTGGAGACATTGGTGGACTCACAGAATTGAGATCCTTGGACTTGTCCTTTAATAAAGGTTTAACAGGTCCTCTCTCTCCACAATTGGGGGGCCTAAGCAAGCTAAATATTCTGATTTTGGCTGGTTGCACCTTCAGTGGNAATATTCCAGATGCATTAGGAAATCTTTCAGAGCTATCTTTCCTGGCTTTGAATTCAAACAACTTTACTGGAAAAATACCCCCTTCATTGGGTAAGCTCTCCAAACTTTATTGGTTGGACTTGGCAGACAATCAGCTCACAGGACCTATCCCAGTTTCAACCTCCACCACCCCTGGCCTAGACCTCCTTTTAAAGGCNAAGCACTTCCATTTCAATAAGAACCAGCTTTCAGGTCCCATTCCTCCTGAACTTTTCAGCTCTGAGATGGTACTCATACACATATTATTTGATGGAAATAAGTTAAGTGGGAGTATACCTTCTACAATGGGACTGGTTCAGACAGTTGAGGTTCTTCGGCTCGATAGAAATTTCCTGACAGGAGAGGTCCCTTCAAATCTCAATAGCCTTACTAACATCAATGAATTGAATTTAGCACACAATAATTTGACAGGTCCTTTGCCAGACTTAACTGCAATGGACACCCTCAACTATGTGGATCTTAGTAACAACTCTTTTGATCCATCTGAAGCTCCAATTTGGTTCTCAACTCTACCATCACTCACCACTCTTATTATGGAGTTTGGATCTCTTGAAGGTCCTCTTCCATCAAAACTCTTCAGCATTCCTCAAATACAGCAAGTGAAGCTAAGAAACAATGCATTGAACAATACACTGGACATGGGTGACAGCATTTGTCCCCAACTGCAGCTTGTAGATTTGCAAGACAACCAGATTTCCTCAGTGACACTCAGTTCACAGTACAAAAACACATTGATCCTAATAGGAAATCCAGTGTGCAGTACTGCTCTCTCTAATACAAATTACTGCCAACTTCAGCAACAGACTAGACAACCCTATTCCACCAGCTTGGCTAATTGTGGAGGCAAATCTTGTCCCCCGGATCAAAAGCTCAGCCCACAAAGTTGCGAATGTGCCTATCCATATGGAGGAATGTTGTACTTTAGAGGACCCTTGTTCAGAGAATTGTCTAATGTGAACATTTTCCATTCACTTGAAATGAGCCTTTGGGTGAAATTGGGTTTAACACCTGGCTCAGTCTCTTTACAAAACCCCTTCTTCAATAGTGATGATTATCTTCAAGTGCAACTAGCACTCTTTCCACCAACAGGGCAGTATTTCAACAGGTCAGAAGTTCAAAGAATTGGGTTTGCATTGAGTAATCAAACCTACAAGCCTCCACATGAGTTTGGACCCTATTACTTTATTGCGTTTCCTTATACTTTCCCAGATTCCCACAGAGGAACTCCTCTTAGCAAAGGTGTTGTTATTGGGATAGCAGTTGGCTCCTCATTTCTGATTTTAGGCTTCATAGGGTTAGGGATATATGCAATCCTGCAAAAGAAGCGAGCAGAAAAAGCCATTGGATTAAGTAGACCATTTGCATCCTGGGCACCAAGTGGCAATGATAGTGGGGGTGCACCACAATTGAAGGGAGCAAGATGGTTCTCTTATGATGAACTCAAAAAGTGCACCAACAATTTCTCTGGAAGCAATGAGCTAGGCTTTGGTGGCTATGGCAAGGGTTATCTGGATCCTGAATATTACATGACCCAACAACTAACTGAGAAGAGTGATGTGTACAGTTTTGGGGTAGTTATGCTTGAGCTGATAACATCCAGGCAACCAATTGAGAAGGGCAAGTACATTGTCCGCGAGGCTAGAACCTTGATGAACAAGAAGGATGAGGAGTATTATGGTTTGAGGGAACTCATGGATCCAGTGGTGAGAAACACACCAAACCTCATAGGATTTGGGAGGTTCTTAGAGTTGGCAATGCAATGTGTTGAGGAATCAGCTGCAGACCGTCCAACAATGAGTGAAGTTGTGAAAGCACTAGAAACCATACTACAGAATGATGGGATGAACACCAATTCCACTTCTGCATCCTCATCTGCCACTGACTTTGGAGTCTCTAATAAGGGTGCCACGAGACATCCTTACATTGATACTACTTTTACTAAGAAAGATAATAATGTTAGTGACAGTAATGCCTTTGACTACAGCGGTGGGTACACACTTTCAACAAAAGTAGAACCCAAATAGATGCTATATATATTTTGTTAGGACATATCATTTTTCTTTTCTTTTCCATTCTCAAATGAAAACATTAAGTTGTTTTCTTCCTCCTTTTTGTTTTTTTTTTCTTTTATAAAATATAATGTTGTCTATTCTTTTTGTGACCAATAGTTTTACTGCATGGAATGTTTGGGAGGAAATGAATATTTCTTCTTAAATAAGATTCTTATCTATGAAAATAGGACACTGATTCATGAACACATCTATAATGTCACCACTCATCGAACACCATCTCTTTTTGTCTCTCTCTTCTTATCACATCATATCATATCACCTATCACTTCTCTCTGGGTGTACCCCAATGAGTGTCTACAAAACATTTTTCGTGAAAANTATATTGCCATAACTGAAAATGGTAAAACAAAACCCCTCTTAATCTGCCNAGGATGAAAGCTTTGCTGTATGTTTATCAACTTCTTGATAGTTAAAAAAAAGTGTAATTATATTCCCCTACAGATGCTTAAAATACACTCAAAAATTCTCATGAGAAATG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00062	135598	142312	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.3.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function GO:0004672 protein kinase activity GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000062s00005473.1	PF08263.7	LRRNT_2	34	71	1.70E-07
Glyur000062s00005473.1	PF07714.12	Pkinase_Tyr	652	755	3.50E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.500
SRR1783600	control	2.648
SRR1783602	moderate drought stress	2.442
SRR1811619	moderate drought stress	2.326

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.155
DRR006520	Root Summer glycyrrhizin high producing strain	8.930
DRR006521	Root Winter glycyrrhizin high producing strain	1.065
DRR006522	Root Winter glycyrrhizin high producing strain	1.210
DRR006523	Root Summer glycyrrhizin low producing strain	3.231
DRR006524	Root Summer glycyrrhizin low producing strain	3.200
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.284
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.178

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	8.945
SRR2868004	Drought Stress(Tissue:root)	5.821
SRR2967015	Control (Tissue:root)	5.204

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	3.015
SRR9715740	Leave	1.078
SRR9715741	Leave	1.652
SRR9715739	Root	0.438
SRR9715742	Root	4.104
SRR9715743	Root	3.483

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.390
SRR8749028	MeJA induced 9h	0.374
SRR8749029	MeJA induced 9h	0.389
SRR8749030	Uninduced	0.968
SRR8749031	Uninduced	1.702
SRR8749032	Uninduced	1.390

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	7.034
SRR8400027	Control-Root	9.025