Gene detail information of Glyur000062s00005489.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G20320.20CTP synthase family protein
NRKHN45108.10CTP synthase [Glycine soja]
COGYP_003483162.12.00E-167CTP synthase [Aciduliprofundum boonei T469]
trEMBLtr|V7CHB5|V7CHB5_PHAVU0CTP synthase {ECO:0000256|RuleBase:RU810713}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00062254673260689-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01937pyrG, CTPS EC:6.3.4.2 Pyrimidine metabolism map00240


Gene Ontology

biological_process

GO:0006221  pyrimidine nucleotide biosynthetic process


molecular_function

GO:0003883  CTP synthase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000062s00005489.1PF06418.9CTP_synth_N1661.80E-32
Glyur000062s00005489.1PF06418.9CTP_synth_N672554.90E-63
Glyur000062s00005489.1PF00117.23GATase2694949.80E-55


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.823
SRR1783600control0.819
SRR1783602moderate drought stress0.755
SRR1811619moderate drought stress0.805

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain2.064
DRR006520Root Summer glycyrrhizin high producing strain1.804
DRR006521Root Winter glycyrrhizin high producing strain1.775
DRR006522Root Winter glycyrrhizin high producing strain1.700
DRR006523Root Summer glycyrrhizin low producing strain7.139
DRR006524Root Summer glycyrrhizin low producing strain7.251
DRR006525Leaf Summer glycyrrhizin high producing strain5.539
DRR006526Leaf Summer glycyrrhizin high producing strain5.685

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)14.561
SRR2868004Drought Stress(Tissue:root)25.562
SRR2967015Control (Tissue:root)45.784

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave17.118
SRR9715740Leave4.697
SRR9715741Leave7.693
SRR9715739Root2.754
SRR9715742Root8.776
SRR9715743Root6.864

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h2.162
SRR8749028MeJA induced 9h0.091
SRR8749029MeJA induced 9h0.210
SRR8749030Uninduced3.019
SRR8749031Uninduced7.456
SRR8749032Uninduced2.089

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root13.632
SRR8400027Control-Root25.280

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved