Gene detail information of Glyur000062s00005501.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G13460.20SU(VAR)3-9 homolog 9
NRXP_004509600.10PREDICTED: probable histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH9-like [Cicer arietinum]
COGNP_295256.14.00E-29hypothetical protein DR_1533 [Deinococcus radiodurans R1]
Swissprottr|Q9T0G7|SUVH9_ARATH0Histone-lysine N-methyltransferase family member SUVH9
trEMBLtr|A0A072U350|A0A072U350_MEDTR0Histone-lysine N-methyltransferase, suvh protein, putative {ECO:0000313|EMBL:KEH20245.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00062393997397765+


Gene family

Gene familysubfamily
Transcription Factors FamilySET


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K11420EHMT EC:2.1.1.43 Lysine degradation map00310
Longevity regulating pathway - mammalmap04211


Gene Ontology

biological_process

GO:0016571  histone methylation

GO:0034968  histone lysine methylation


cellular_component

GO:0005634  nucleus


molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding

GO:0018024  histone-lysine N-methyltransferase activity

GO:0042393  histone binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000062s00005501.1PF02182.12SAD_SRA2724293.00E-56
Glyur000062s00005501.1PF05033.11Pre-SET4595571.60E-18
Glyur000062s00005501.1PF00856.23SET5767082.40E-17


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control12.991
SRR1783600control12.958
SRR1783602moderate drought stress9.581
SRR1811619moderate drought stress9.560

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain11.414
DRR006520Root Summer glycyrrhizin high producing strain11.343
DRR006521Root Winter glycyrrhizin high producing strain5.474
DRR006522Root Winter glycyrrhizin high producing strain5.246
DRR006523Root Summer glycyrrhizin low producing strain5.715
DRR006524Root Summer glycyrrhizin low producing strain5.721
DRR006525Leaf Summer glycyrrhizin high producing strain7.549
DRR006526Leaf Summer glycyrrhizin high producing strain7.300

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)17.392
SRR2868004Drought Stress(Tissue:root)14.602
SRR2967015Control (Tissue:root)14.884

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave5.457
SRR9715740Leave5.912
SRR9715741Leave5.191
SRR9715739Root7.230
SRR9715742Root9.320
SRR9715743Root8.032

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h5.886
SRR8749028MeJA induced 9h4.642
SRR8749029MeJA induced 9h1.950
SRR8749030Uninduced1.366
SRR8749031Uninduced0.656
SRR8749032Uninduced0.480

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root20.415
SRR8400027Control-Root18.875

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved