Gene detail information of Glyur000063s00005834.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G30440.10UDP-D-glucuronate 4-epimerase 1
NRXP_003549520.10PREDICTED: UDP-glucuronate 4-epimerase 1-like [Glycine max]
COGYP_002890426.13.00E-112NAD-dependent epimerase/dehydratase [Thauera sp. MZ1T]
Swissprottr|Q9M0B6|GAE1_ARATH0UDP-glucuronate 4-epimerase 1
trEMBLtr|I1MSX9|I1MSX9_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G07740.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0006398891100186+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K08679E5.1.3.6 EC:5.1.3.6 Amino sugar and nucleotide sugar metabolism map00520


Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process


molecular_function

GO:0003824  catalytic activity

GO:0016857  racemase and epimerase activity, acting on carbohydrates and derivatives

GO:0050662  coenzyme binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000063s00005834.1PF01370.16Epimerase933262.30E-48


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control163.413
SRR1783600control143.885
SRR1783602moderate drought stress188.134
SRR1811619moderate drought stress188.948

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain657.464
DRR006520Root Summer glycyrrhizin high producing strain650.532
DRR006521Root Winter glycyrrhizin high producing strain687.375
DRR006522Root Winter glycyrrhizin high producing strain673.175
DRR006523Root Summer glycyrrhizin low producing strain1208.476
DRR006524Root Summer glycyrrhizin low producing strain1144.071
DRR006525Leaf Summer glycyrrhizin high producing strain229.329
DRR006526Leaf Summer glycyrrhizin high producing strain230.463

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)159.394
SRR2868004Drought Stress(Tissue:root)189.745
SRR2967015Control (Tissue:root)520.545

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave695.474
SRR9715740Leave437.055
SRR9715741Leave474.454
SRR9715739Root1165.816
SRR9715742Root1471.630
SRR9715743Root1329.635

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h805.419
SRR8749028MeJA induced 9h1282.127
SRR8749029MeJA induced 9h1053.824
SRR8749030Uninduced929.180
SRR8749031Uninduced449.331
SRR8749032Uninduced777.523

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root202.634
SRR8400027Control-Root373.405

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved