Gene detail information of Glyur000063s00005846.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G16060.1 | 7.00E-80 | ARIA-interacting double AP2 domain protein |
| NR | XP_004507769.1 | 0 | PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060-like [Cicer arietinum] |
| Swissprot | tr|Q94AN4|AP2L1_ARATH | 4.00E-109 | AP2-like ethylene-responsive transcription factor At1g16060 |
| trEMBL | tr|G7JFH5|G7JFH5_MEDTR | 1.00E-176 | AP2-like ethylene-responsive transcription factor {ECO:0000313|EMBL:AES92458.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00063 | 192385 | 194418 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | AP2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000063s00005846.1 | PF00847.15 | AP2 | 43 | 99 | 1.40E-09 |
| Glyur000063s00005846.1 | PF00847.15 | AP2 | 142 | 193 | 1.10E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.343 |
| SRR1783600 | control | 2.267 |
| SRR1783602 | moderate drought stress | 1.964 |
| SRR1811619 | moderate drought stress | 2.148 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.085 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.076 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 11.753 |
| SRR2868004 | Drought Stress(Tissue:root) | 3.007 |
| SRR2967015 | Control (Tissue:root) | 6.024 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.037 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.023 |
| SRR9715739 | Root | 1.589 |
| SRR9715742 | Root | 1.422 |
| SRR9715743 | Root | 1.019 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.065 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.452 |
| SRR8749031 | Uninduced | 0.749 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 14.454 |
| SRR8400027 | Control-Root | 16.827 |