Gene detail information of Glyur000063s00005867.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G17420.1 | 1.00E-59 | Cellulose synthase family protein |
| NR | XP_004507755.1 | 1.80E-101 | PREDICTED: cellulose synthase A catalytic subunit 7 [UDP-forming]-like [Cicer arietinum] |
| Swissprot | tr|Q9SWW6|CESA7_ARATH | 1.00E-83 | Cellulose synthase A catalytic subunit 7 [UDP-forming] |
| trEMBL | tr|V7AXT9|V7AXT9_PHAVU | 1.00E-101 | Cellulose synthase {ECO:0000256|RuleBase:RU361116} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00063 | 300193 | 305139 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
| Carbohydrate-Active enzymes Family | GT2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000063s00005867.1 | PF14569.1 | zf-UDP | 27 | 105 | 2.20E-46 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.033 |
| SRR1783600 | control | 4.052 |
| SRR1783602 | moderate drought stress | 1.937 |
| SRR1811619 | moderate drought stress | 2.055 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.054 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.996 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.485 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.481 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.555 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.580 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.763 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.823 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 9.328 |
| SRR2868004 | Drought Stress(Tissue:root) | 4.806 |
| SRR2967015 | Control (Tissue:root) | 6.318 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 3.108 |
| SRR9715740 | Leave | 0.319 |
| SRR9715741 | Leave | 0.274 |
| SRR9715739 | Root | 0.673 |
| SRR9715742 | Root | 3.176 |
| SRR9715743 | Root | 2.814 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.365 |
| SRR8749028 | MeJA induced 9h | 1.016 |
| SRR8749029 | MeJA induced 9h | 0.779 |
| SRR8749030 | Uninduced | 0.348 |
| SRR8749031 | Uninduced | 0.759 |
| SRR8749032 | Uninduced | 0.458 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 6.614 |
| SRR8400027 | Control-Root | 10.734 |