Gene detail

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Gene detail information of Glyur000063s00005867.2

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G17420.1	1.00E-59	Cellulose synthase family protein
NR	XP_004507755.1	1.80E-101	PREDICTED: cellulose synthase A catalytic subunit 7 [UDP-forming]-like [Cicer arietinum]
Swissprot	tr\|Q9SWW6\|CESA7_ARATH	1.00E-83	Cellulose synthase A catalytic subunit 7 [UDP-forming]
trEMBL	tr\|V7AXT9\|V7AXT9_PHAVU	1.00E-101	Cellulose synthase {ECO:0000256\|RuleBase:RU361116}

Sequence

Transcript Sequence

>Glyur000063s00005867.2
TGCAGCACAAGCCTTTGAGGAACTTGGATGGTCAGGTATGTGAGATATGTGGTGATGATGTGGGACTCACAGTGGATGGAGACTTGTTTGTGGCATGCAATGAGTGTGGTTTTCCAGTGTGTCGTCCATGCTATGAATATGAAAGGAGGGAAGGGAGACAAGTCTGTCCACAGTGCAAGACCAGATACAAGCGACTCAAAGGGAGCCCGAGGGTTGAGGGAGATGAAGATGAGGAGGATGTGGATGATATTGAACATGAATTTAATATTGAGNACAAAACGAACCAGCGTGACCATTCTGCTGAGGCCATGCTGCATGGGAAGATGAGCTATGGAAGAGGACTTGAAGATGATGAGAATGCCCACTTCCCAGCTGCTGTTTTTGCTGGCGGTGGCTCTCGGCCAGTGAGTGGGGAGTTTCCAATAGCACCTCATGGTTATGGGGACCCAATGTTATCTTCNTCCCTGCATAAACGAGTGCACCCATATCCCGGTAAGATGTAGTTTATAGCCTGTGCTCTTAGACTTTGATAACAGTGATTGAAATAATTTACCAGCCCTCTTTCAAAATNTACATCACTTTCTTGGTTCTTTACAAATCGGGTTATGCTGATATTGGTTTCATTTCTTAGTCTAGTACAATGTGGTGATTTATTTGCAATATGTGGCACAATGTNATCAAAGCAGGAAGTGCAGGATGGGATGAAAAGAAAGAAGATGGATGCAAAGATAGAATGGATGACTGGAAATTGCAACAAGGCAATTTGGGACCTGAACCTGATGAAGATCAAGATGCAGCCATGTTGGATGAAGCAAGGCAACCATTGTCAAGGAAGGTACCAATAGCATCTAGCAAAATCAATCCATACAGGATGGTGATCGTGGCACGGCTTGTTATTCTTGGCTTCTTCCTCAGATATAGAATTTTGAACCCAGTACACGATGCAATGGGGTTATGGCTAACTTCCATTATATGTAAAGGTACCTTCACTCCTGATAATGTTGAAATCCCAAAGTTTAAACTTATAATGCTGACTAAAACAAAGTTGTTTACCAGGTATGAGCGTGAAGGTGAGCTCAATATGCTTGCTCCTGTAGATGTCTTTGTTAGTACTGTGGATCCCATGAAGGAACCTCCTCTGGTTACAGCAAACACAATTCTTTCAATCTTGGCCATGGACTATCCCATTGATAAGATATCATGCTACATTTCTGATGATGGAGCTTCAATGTGTACATTTGAAGCCCTGTCAGAAACAGCTGAGTTTGCTAGGAAGTGGGTGCCATTCTGCAAGAAATTTTCTATAGAACCTCGAGCACCAGAGATGTACTTCAGCGAGAAAATTGACTACCTAAAGGACAAGGTGCAGCCCACTTTTGTCAAAGAACGCCGAGCTATGAAGAGAGAATATGAAGAGTTTAAGGTTAGGATCAATGCACTTGTGGCAAAAGCTCAGAAGGTTCCTCCAGGAGGGTGGATTATGCAGGATGGGACACCATGGCCAGGAAACAATACTAAGGATCATCCTGGGATGATTCAAGTCTTTCTTGGTCACAGTGGAGGTCATGATAGTGAAGGAAACCAGCTTCCCCGTCTTGTTTATGTNTCCCGAGAGAAAAGGCCTGGATTTCAACACCACAAGAAAGCTGGTGCCATGAATGCTCTGATTAACATGAAGGGTCTAGATGGTATTCAGGGTCCTGTATATGTTGGCACAGGGTGTGTATTTAGGAGGCAAGCTTTATATGGCTATAATCCTCCCAAGGGTCCCAAGCGTCCAAAAATGGTAAGCTGTGACTGCTGCCCATGTTTTGGAAGGCGCAAGAAGGTTAAGNATGCAAAGAATGATGCAAATGGAGAGGCTGCAAACCTAAGAGGAATGGATGATGACAAAGAGTTGCTGATGTCTCAGATGAATTTTGAGAAGAAATTTGGGCAGTCATCAATTTTTGTGACTTCAACCTTGATGGAAGAGGGTGGTGTACCTCCTTCCTCAAGTCCAGCAAGCCAGCTTAAAGAAGCCATTCATGTAATCAGCTGTGGATATGAAGATAAAACTGAATGGGGCATTGAGGTGCTTCGTTGGGCCCTTGGCTCCATTGAGATCTTCTTCAGTCGTCATTGCCCTTTATGGTATGGCTACAAGGAAGGGAAGCTGAAGTGGCTGGAGCGATTTGCCTATGCAAACACAACCGTCTACCCCTTCACCTCCATACCTCTAGTTGCCTACTGTATTCTTCCAGCTGTCTGCTTACTCACCGACAAATTCATCATGCCACCGATAAGTACTTTTGCTGGGTTGTACTTCGTTGCTCTTTTCTCTTCAATCATTGCAACGGGCATTCTTGAGTTGAAATGGAGTGGAGTGAGCATTGAGGAATGGTGGAGAAACGAGCAATTCTGGGTCATCGGTGGTGTATCAGCACACCTCTTTGCTGTCATACAAGGTCTTCTTAAGGTTCTGGCTGGAATTGACACCAACTTCACTGTTACATCCAAGGCAGCAGATGATGAGGATTTTGGAGAATTATACACCTTTAAGTGGACTACTCTCCTAATTCCTCCAACCACCATCTTAATAATCAACATTGTTGGGGTTGTTGCTGGAATCTCAGATGCCATAAACAANGGGTACCAATCATGGGGACCTCTATTTGGAAAACTTTTCTTTTCCTTCTGGGTGATTGTCCATCTGTATCCATTCCTTAAAGGTTTGATGGGTCGGCAAAACCGCACACCCACCATTGTTGTGATATGGTCAGTGTTGTTGGCTTCCATTTTCTCCTTGCTCTGGGTAAGAATTGACCCATTCGTGCTCAAAACTAAGGGACCTGATACCAAGCTATGTGGAATCAACTGTTGAAAGACTGGTTTTCCTATAGTATATTTGGTGAACATCTTTATGTAAATTTTTGATTGAGCTGTATGATGCGTGAACCAACAAAGTTAAGATGCACAAGAATGAGTGAGCAAAGAGTGATAATTAGGAAGTGCAAATGCAGTTTTCTCACTTTTGTAAATGTACTGGATAACATGTTGGTTACCATATGTTTCGGCTCAAAATTCCAAGGATTGGAAAGTAAACCAACATTACAGGTTTACCTATACATTGTTGCAAATTAGTATGTATTGATAATGTTCTGTCACAGGCATCTACATCACAGGCATATGTAAAAATTGCATAATGAAGAATTGCAACATGAAGAAACATATGTTTGGCATCATTACCACTGGACGG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00063	300193	305139	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0030244 cellulose biosynthetic process

cellular_component GO:0016020 membrane molecular_function GO:0016760 cellulose synthase (UDP-forming) activity "

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000063s00005867.2	PF03552.9	Cellulose_synt	145	336	3.20E-114
Glyur000063s00005867.2	PF03552.9	Cellulose_synt	471	727	5.00E-139

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.033
SRR1783600	control	4.052
SRR1783602	moderate drought stress	1.937
SRR1811619	moderate drought stress	2.055

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.054
DRR006520	Root Summer glycyrrhizin high producing strain	4.996
DRR006521	Root Winter glycyrrhizin high producing strain	0.485
DRR006522	Root Winter glycyrrhizin high producing strain	0.481
DRR006523	Root Summer glycyrrhizin low producing strain	1.555
DRR006524	Root Summer glycyrrhizin low producing strain	1.580
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.763
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.823

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	9.328
SRR2868004	Drought Stress(Tissue:root)	4.806
SRR2967015	Control (Tissue:root)	6.318

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	3.108
SRR9715740	Leave	0.319
SRR9715741	Leave	0.274
SRR9715739	Root	0.673
SRR9715742	Root	3.176
SRR9715743	Root	2.814

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.365
SRR8749028	MeJA induced 9h	1.016
SRR8749029	MeJA induced 9h	0.779
SRR8749030	Uninduced	0.348
SRR8749031	Uninduced	0.759
SRR8749032	Uninduced	0.458

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	6.614
SRR8400027	Control-Root	10.734