Gene detail information of Glyur000063s00005891.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G57970.21.00E-101DNA glycosylase superfamily protein
NRXP_003549544.10PREDICTED: uncharacterized protein LOC100785912 [Glycine max]
COGYP_006759958.11.00E-60DNA-3-methyladenine glycosylase I Tag [Desulfobacula toluolica Tol2]
trEMBLtr|I1MT24|I1MT24_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G08160.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00063407358411129-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01246tag EC:3.2.2.20 Base excision repair map03410


Gene Ontology

biological_process

GO:0006281  DNA repair

GO:0006284  base-excision repair


molecular_function

GO:0003824  catalytic activity

GO:0008725  DNA-3-methyladenine glycosylase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000063s00005891.1PF03352.8Adenine_glyco1593387.20E-63


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control14.014
SRR1783600control14.125
SRR1783602moderate drought stress11.199
SRR1811619moderate drought stress10.655

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain13.344
DRR006520Root Summer glycyrrhizin high producing strain13.682
DRR006521Root Winter glycyrrhizin high producing strain7.529
DRR006522Root Winter glycyrrhizin high producing strain7.916
DRR006523Root Summer glycyrrhizin low producing strain11.738
DRR006524Root Summer glycyrrhizin low producing strain11.785
DRR006525Leaf Summer glycyrrhizin high producing strain7.320
DRR006526Leaf Summer glycyrrhizin high producing strain7.103

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)20.421
SRR2868004Drought Stress(Tissue:root)20.714
SRR2967015Control (Tissue:root)18.262

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave7.454
SRR9715740Leave6.703
SRR9715741Leave7.118
SRR9715739Root11.304
SRR9715742Root15.194
SRR9715743Root12.775

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h13.082
SRR8749028MeJA induced 9h14.448
SRR8749029MeJA induced 9h7.662
SRR8749030Uninduced3.218
SRR8749031Uninduced1.213
SRR8749032Uninduced1.574

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root21.738
SRR8400027Control-Root24.872

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved