Gene detail

Home
Network
Tools
- Search
- Blast
- Motif
- GSEA
- Heatmap Analysis
- JBrowse
Gene family
KEGG
Download
Help

Gene detail information of Glyur000063s00005895.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G57990.1	4.00E-160	ubiquitin-specific protease 23
NR	KHN42818.1	0	Ubiquitin carboxyl-terminal hydrolase 23 [Glycine soja]
Swissprot	tr\|Q9FPS4\|UBP23_ARATH	0	Ubiquitin carboxyl-terminal hydrolase 23
trEMBL	tr\|I1MT28\|I1MT28_SOYBN	0	Ubiquitin carboxyl-terminal hydrolase {ECO:0000256\|RuleBase:RU004435}

Sequence

Transcript Sequence

>Glyur000063s00005895.1
TTCTCTTTGGCAGAAGCCGAAACCCTCTGCTTCTGTTCTGCTTCTGCTTCGCTTCCACTTATTCACGCGTTTCCCACTTTCCACTCTCCATTCCGAAATCCGAAGCTTCTTCTCAAATCCACAAATGGCGGAGACCGAAACGGAAAANCTGAATTCGCCGGATCCTTCCTCCAACACCCTTCTCCTCGGGAGAAAAATCAAGTTCGTCCCNCTCAAGAAACCCTACAACGGATTCTCCAATGATTTCCACATCGAAACGCTAAACCCTTCCACCTCCGAACCTCGACCNCCCGGTACCTCGCCCGCAGCCCCCAAAAAACACGACGTTTCCGAATTCTCCGAGTATGGCTTGGATCCGGAGCTCAGCTTCGGGATTACCTTCCGGAGAATAGGAGCTGGACTGCGTAATCTCGGAAACACTTGTTTCCTCAATTCGGTATTGCAGTGTTTGACATATACGGAGCCTTTAGCTGCATATCTGCAAAGTGGAAAGCATAAAACTTCATGCCACATTGCTGGATTTTGTGCTCTCTGTGCAATACAGAATCATGTCAGTCGTGCACTGCAATCAACCGGGAGAATATTGTCCCCAGAGGATCTGGTTGGAAACCTACGGTGTATATCACGTAATTTCCGAAATGCAAGGCAGGAGGATGCACATGAGTATATGGTGAACTTACTTGAGTCCATGCATAAATGCTGCCTGCCTTCTGGAGTACCTAGTGAATCACCTGGTGCTTATGAAAAAAGTTTGGTTCATAAGATATTCGGTGGTCGTCTCCGGAGTCAGGTGAAATGCCAGCAGTGTTCTCATTGCTCCAACAAGTTTGATCCATTCTTAGATTTAAGTCTTGAAATATTCAAGGCAGAGTCATTGCAAAAAGCACTTGTGAATTTCACAGCCGCGGAATGGTTGGATGGAGGGGAGAGGCAATACCATTGTCAGCGATGCAAGCAGAAAGTTAGGGCTCTTAAACAGCTAACAATTCACAAGGCACCTTATGTGCTGACAATTCATCTAAAGCGGTTCCACGCACATGATCCTGGACAAAAGATTAAAAAGAAGGTTCAGTTTGGTTGTGCACTGGATTTAAAACCATTTGTCAGCGGCTCATATGATGGAGATGTGAAGTACTCTCTTTATGGGGTTCTAGTGCATTCTGGTTCCAGCACCCATTCTGGCCACTATTACTGCTATGTTCGCACTTCAAATAACATGTGGTATACCTTGGACGACAACCGGGTAAGCCATGTCAGTGAAAGGGAAGTTTTAAATCAGCAAGCTTACATGTTGTTTTATGTTCGTGATAGAAAAAGTATTGCTCCAAGAAAGCCTGTTGACATTGTTAAGGAGGACAATATGAAGTCTAATGTGACTGGAAATAGAGATTCGTCAATTTTGAACCATGTATTAAAAGAATACACAAATGGTCCNGTGGAAAATAAATTTTGTGGCAAACCTTTGACTGCTGAAGATCAGAAAAATTCGCCAAATGCTGATCCATCAAGGATTTCCTGTATGAAGGATGCTCTGGTTCAACAAAAAAATAGTGTCATATTAGCAGAAAGCTTAACACCAAGTAAAAAACCTGTATCAGACTCACCAGGAGGGCTCTCATTTGCTAAATCAGAACCTGAATGCTTGTCATCATTAGATCACTCTGGAAAAGACAATAACCTCCATAGTAATCTGAAATGTTTAGCTGCACCAGATGGTGAAAAAAATAATATGTTCAGTGGGAATGCAGTAGAGCCAACCTTCATTCATCCCCAGACTTCTACTGGTAAACATGCTACTGACGGAACATCTCAGTCTCAGGAGAAAAATCTTGCCGCAAAAGTTAATGCTGCTGCAACTCAAGAATCAATCACAAATTTGTCAAAGAGCACTACCCCTATAACTTCATCAATTCAACCNAATGTTATCCATCAGGTTGGAACATCTGCAACTGGTTTGGTGTACGATAAAGCATGCACTGGAATGTGTGAAAATGGATCNTTGAAAGCGGAGAATCTTGATCAAAAGCAAGTGAAAAAATCAAAAAAGAAATTTTTGAAGTACCGGGTACTAAGCATGCATCTTCGCTCAACCCACATTTTCTTGGCATACTTAGGCCCACGGAAGAAGAAGAATCACAAAAGAAGTAAACGGCGCATGTTGGGTTTGAATTGTTCTAACAAAGAAAAGTTTGATAAACATGCAATTTCATCAGATGTTGGGCCATCTACACCTGGAAAAGCTCATGTATTTCCCTCTGTATCAAGTTGTTCTGAGAGCAAGGCAATCAAGACAGGTTACAGACCTGGTGCTAATATTAAATCTAATGATGAATCTCTGATAGAAAATGATGCTGAAGGAGAATTTAGGAAGAGAATTGATCAGAACTGTTCTGTGCTTGCAACTGCTACACAAATAGAAAATATATCTGGGTGTTCAGTGGCAAATGAATTTGAAGCCAGACAGGCTTATAGTCTACAAGATGGTAAAAGAGATCAAATGCATAATAGTTTAATGAGGATGCTTACTCGAGGTCTGGAGGAGACAGTTGTTGCACGTTGGGATGATATAGAATTATCTTCATCTCAGCCCTTGGAGTCAAAGAATTACCAAACTGTCAGCATTGGATATGTCGGGGATGAATGGGATGAAGAATATGACAAGGGGAAGAGGAAGAAGATAAGGGGCTTCAAGCAAAGCTTTGATGGGCCGAACCTTTTCCAACAAATTGCGACCGAGAAATCCAAGTCAAAAAGGGTGAAATTGGAACAATCTAACTCAGGGAACCCGCCATTCAGGATATGATTCCAAAATTAGTTGCCCTCTATCGTTTGTGGGCTTGTCGCAATTATTGATTTGTCAAACGCTGAAAATGTAGTGAAAAGAGCACTACCGAGTACAAATTTTGTCTGCTGGATCATGTTGTCTCTGGGGCAGAGCTGCTGAGGGTTGGGTTTTTTAAATGCACCTGGGATTCCCGTAGGATATTTTTCTCATTTCAGACAACTTTTAGCTACGTGTTTGAGAAGTGAAAAATGAAACCCATTGTGTTTCTGTTGTAGTAGCTGCTTGTGGTAGCTCATAAATTTTGTTCATGAATCTTATATTTCTTATGACATTGCAAAATGGCTGTATCTTGATTTG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00063	434050	441050	-

Gene family

Gene family	subfamily
Ubiquitin Family	USP

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006511 ubiquitin-dependent protein catabolic process

molecular_function GO:0036459 thiol-dependent ubiquitinyl hydrolase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000063s00005895.1	PF00443.24	UCH	91	392	3.20E-58

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	288.506
SRR1783600	control	287.001
SRR1783602	moderate drought stress	451.361
SRR1811619	moderate drought stress	440.174

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	286.815
DRR006520	Root Summer glycyrrhizin high producing strain	283.839
DRR006521	Root Winter glycyrrhizin high producing strain	75.189
DRR006522	Root Winter glycyrrhizin high producing strain	73.594
DRR006523	Root Summer glycyrrhizin low producing strain	329.841
DRR006524	Root Summer glycyrrhizin low producing strain	326.187
DRR006525	Leaf Summer glycyrrhizin high producing strain	17.160
DRR006526	Leaf Summer glycyrrhizin high producing strain	16.860

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	92.452
SRR2868004	Drought Stress(Tissue:root)	86.736
SRR2967015	Control (Tissue:root)	113.466

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	28.092
SRR9715740	Leave	34.019
SRR9715741	Leave	43.038
SRR9715739	Root	18.426
SRR9715742	Root	167.330
SRR9715743	Root	141.042

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	149.358
SRR8749028	MeJA induced 9h	87.416
SRR8749029	MeJA induced 9h	99.042
SRR8749030	Uninduced	41.313
SRR8749031	Uninduced	59.203
SRR8749032	Uninduced	58.055

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	89.713
SRR8400027	Control-Root	94.873