Gene detail information of Glyur000064s00005592.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G16700.1 | 1.00E-158 | phosphatidylserine decarboxylase 1 |
| NR | KHN42684.1 | 0 | Phosphatidylserine decarboxylase proenzyme [Glycine soja] |
| COG | YP_001839911.1 | 2.00E-46 | bifunctional Sodium:alanine symporter/phosphatidylserine decarboxylase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] |
| Swissprot | tr|Q84V22|PSD1_ARATH | 0 | Phosphatidylserine decarboxylase 1 alpha chain (Precursor) |
| trEMBL | tr|C6TIQ9|C6TIQ9_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G41630.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00064 | 24742 | 29992 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01613 | psd, PISD | EC:4.1.1.65 | Glycerophospholipid metabolism | map00564 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000064s00005592.1 | PF02666.10 | PS_Dcarbxylase | 155 | 434 | 1.20E-64 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.473 |
| SRR1783600 | control | 6.421 |
| SRR1783602 | moderate drought stress | 8.899 |
| SRR1811619 | moderate drought stress | 8.796 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 13.082 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 13.034 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 14.760 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 14.314 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 10.869 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 11.031 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.139 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.209 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 7.021 |
| SRR2868004 | Drought Stress(Tissue:root) | 7.533 |
| SRR2967015 | Control (Tissue:root) | 7.439 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 3.997 |
| SRR9715740 | Leave | 4.369 |
| SRR9715741 | Leave | 3.966 |
| SRR9715739 | Root | 3.914 |
| SRR9715742 | Root | 7.212 |
| SRR9715743 | Root | 5.997 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 10.436 |
| SRR8749028 | MeJA induced 9h | 6.349 |
| SRR8749029 | MeJA induced 9h | 6.773 |
| SRR8749030 | Uninduced | 4.237 |
| SRR8749031 | Uninduced | 1.834 |
| SRR8749032 | Uninduced | 2.993 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 8.942 |
| SRR8400027 | Control-Root | 9.288 |