Gene detail information of Glyur000064s00005595.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G47435.2 | 1.00E-112 | formyltetrahydrofolate deformylase, putative |
| NR | XP_004511698.1 | 6.36E-171 | PREDICTED: formyltetrahydrofolate deformylase-like [Cicer arietinum] |
| COG | NP_214247.1 | 4.00E-58 | formyltetrahydrofolate deformylase [Aquifex aeolicus VF5] |
| Swissprot | tr|Q93YQ3|PURU1_ARATH | 1.00E-140 | Formyltetrahydrofolate deformylase 1, mitochondrial (Precursor) |
| trEMBL | tr|G7JXD1|G7JXD1_MEDTR | 1.00E-158 | Formyltetrahydrofolate deformylase {ECO:0000313|EMBL:AES94288.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00064 | 37758 | 40631 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01433 | purU | EC:3.5.1.10 | Glyoxylate and dicarboxylate metabolism | map00630 |
| One carbon pool by folate | map00670 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000064s00005595.1 | PF00551.14 | Formyl_trans_N | 79 | 244 | 6.30E-27 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.132 |
| SRR1811619 | moderate drought stress | 0.121 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.968 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.965 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 2.996 |
| SRR2868004 | Drought Stress(Tissue:root) | 4.852 |
| SRR2967015 | Control (Tissue:root) | 2.706 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 14.642 |
| SRR9715740 | Leave | 11.177 |
| SRR9715741 | Leave | 12.872 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.143 |
| SRR9715743 | Root | 0.021 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.078 |
| SRR8749028 | MeJA induced 9h | 0.082 |
| SRR8749029 | MeJA induced 9h | 0.181 |
| SRR8749030 | Uninduced | 0.158 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 2.143 |
| SRR8400027 | Control-Root | 2.233 |