Gene detail information of Glyur000064s00005605.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G60580.1 | 3.00E-29 | C2H2-like zinc finger protein |
| NR | XP_004299433.1 | 2.27E-96 | PREDICTED: zinc finger protein ZAT4-like [Fragaria vesca subsp. vesca] |
| Swissprot | tr|Q9M202|ZAT9_ARATH | 8.00E-42 | Zinc finger protein ZAT9 |
| trEMBL | tr|A0A067FDZ7|A0A067FDZ7_CITSI | 1.00E-95 | Uncharacterized protein {ECO:0000313|EMBL:KDO61436.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00064 | 102567 | 103505 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2H2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000064s00005605.1 | PF13912.1 | zf-C2H2_6 | 4 | 26 | 5.90E-07 |
| Glyur000064s00005605.1 | PF13912.1 | zf-C2H2_6 | 211 | 229 | 0.00039 |
| Glyur000064s00005605.1 | PF13912.1 | zf-C2H2_6 | 251 | 274 | 2.60E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 12.368 |
| SRR1783600 | control | 12.938 |
| SRR1783602 | moderate drought stress | 6.377 |
| SRR1811619 | moderate drought stress | 6.276 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.091 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.991 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.951 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.928 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.029 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.509 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.736 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.872 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 19.297 |
| SRR2868004 | Drought Stress(Tissue:root) | 22.236 |
| SRR2967015 | Control (Tissue:root) | 22.379 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 10.663 |
| SRR9715740 | Leave | 15.876 |
| SRR9715741 | Leave | 17.592 |
| SRR9715739 | Root | 21.097 |
| SRR9715742 | Root | 16.747 |
| SRR9715743 | Root | 14.194 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 14.165 |
| SRR8749028 | MeJA induced 9h | 10.336 |
| SRR8749029 | MeJA induced 9h | 9.708 |
| SRR8749030 | Uninduced | 8.448 |
| SRR8749031 | Uninduced | 6.511 |
| SRR8749032 | Uninduced | 5.433 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 20.670 |
| SRR8400027 | Control-Root | 21.059 |