Gene detail

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Gene detail information of Glyur000064s00005608.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G47500.1	1.00E-157	Pectin lyase-like superfamily protein
NR	XP_004511684.1	0	PREDICTED: probable pectinesterase 68-like [Cicer arietinum]
COG	YP_006407803.1	6.00E-50	pectin methylesterase [Belliella baltica DSM 15883]
Swissprot	tr\|Q8LPF3\|PME68_ARATH	0	Probable pectinesterase 68 (Precursor)
trEMBL	tr\|V7CGN7\|V7CGN7_PHAVU	0	Pectinesterase {ECO:0000256\|RuleBase:RU000589}

Sequence

Transcript Sequence

>Glyur000064s00005608.1
ATGGCGCTTCCTGCTCTCTTCCACTCCTCGCTGCAATTGCTTCTATTGGTTTTCATCACTTGCATTGTAACAGTAGTGACATGCACAGGCTACCACGACAGTAGTGGCTTCAACACATTGTCTTCTACAAACTCATCCAGGCAGCTGAACCACCATCACCATTGGGTGGGACCCATCGGTCACCGTGTATTCACCGTCGACGTCAACGGTGGTGGCGACTTCCGGTCCGTCCAAGACGCCGTGAATGCTGTCCCAGACAACAATAGAATGAACGTCCTCATTCAAATCAGCGCCGGATACTACATAGAGAAGGTAGTGGTGCCCGTGACGAAGCCGTACATTACGTTTCAGGGAGAGGGAAGGGAAGTGACGGTGATAGAATGGCATGACCGAGCCAGTGACCCGGGTCCCAACGGACAACAACTACGTACTTACAGAACCGCTTCTGTTACTGTTTTTGCCAGCTACTTTTCCGCTAGGAATATCAGCTTCAAGAACACAGCGCCGGCACCGATGCCGGGGATGCAGGGATGGCAGGCGGCGGCGTTTAGGATATCAGGGGACAAGGCATACTTCTCAGGGTGTGGGTTCTACGGTGCACAGGACACACTTTGCGACGACGCTGGCAGGCATTACTTCAAGGAATGCTACATCGAGGGCTCCATTGATTTCATCTTTGGGAATGGCAGGTCCATGTACAAGGATTGCGAGCTGCATTCAATAGCAACGAGGTTCGGGTCGATAGCAGCGCAGGATAGGAAATACCCAAAGGAGAGGACAGGGTTCGCATTCGTAAGATGCAGGGTGACAGGAACGGGGCCGCTATATGTGGGNAGAGCAATGGGGCAGTACTCCAGAATTGTCTACGCCTACACCTATTTCGACGATATCGTTGCCCACGGCGGTTGGGATGATTGGGACCATGCCAACAACAAAAACAAGACTGTGTTCTTCGGAGTGTACAAGTGTTGGGGACCAGGAGCAGAGGCAGTACGTGGGGTCTCATGGGCCCGAGAGTTAGATTTCGAAACCGCGCATCCATTTCTCGTGAAGAGTTTTGTCAACGGGAGACACTGGATCGCACCCTCTGATGCTTAG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00064	123867	126810	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	CE8

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0042545 cell wall modification

cellular_component GO:0005618 cell wall molecular_function GO:0030599 pectinesterase activity "

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000064s00005608.1	PF01095.14	Pectinesterase	65	356	4.40E-62

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.121
SRR1783600	control	2.058
SRR1783602	moderate drought stress	0.772
SRR1811619	moderate drought stress	0.932

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.178
DRR006520	Root Summer glycyrrhizin high producing strain	1.700
DRR006521	Root Winter glycyrrhizin high producing strain	0.036
DRR006522	Root Winter glycyrrhizin high producing strain	0.098
DRR006523	Root Summer glycyrrhizin low producing strain	0.200
DRR006524	Root Summer glycyrrhizin low producing strain	0.502
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.168
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.168

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	7.838
SRR2868004	Drought Stress(Tissue:root)	1.454
SRR2967015	Control (Tissue:root)	4.227

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	6.511
SRR9715740	Leave	0.000
SRR9715741	Leave	1.866
SRR9715739	Root	0.586
SRR9715742	Root	0.406
SRR9715743	Root	0.529

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.945
SRR8749028	MeJA induced 9h	1.704
SRR8749029	MeJA induced 9h	1.897
SRR8749030	Uninduced	0.024
SRR8749031	Uninduced	0.035
SRR8749032	Uninduced	0.828

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	3.643
SRR8400027	Control-Root	2.717