Gene detail information of Glyur000064s00005625.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G17260.12.00E-156Lactate/malate dehydrogenase family protein
NRXP_003517426.10PREDICTED: L-lactate dehydrogenase A-like [Glycine max]
COGYP_003889602.14.00E-90L-lactate dehydrogenase [Cyanothece sp. PCC 7822]
Swissprottr|P22988|LDHA_HORVU4.00E-166L-lactate dehydrogenase A
trEMBLtr|I1J9W9|I1J9W9_SOYBN0L-lactate dehydrogenase {ECO:0000256|RuleBase:RU000496}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00064184677186208+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00016LDH, ldh EC:1.1.1.27 Glycolysis / Gluconeogenesis map00010
Pyruvate metabolismmap00620
Propanoate metabolismmap00640
Cysteine and methionine metabolismmap00270
Glucagon signaling pathwaymap04922


Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process

GO:0019752  carboxylic acid metabolic process

GO:0055114  oxidation-reduction process


cellular_component

GO:0005737  cytoplasm


molecular_function

GO:0003824  catalytic activity

GO:0004459  L-lactate dehydrogenase activity

GO:0016491  oxidoreductase activity

GO:0016616  oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000064s00005625.1PF00056.18Ldh_1_N391772.50E-43
Glyur000064s00005625.1PF02866.13Ldh_1_C1803436.30E-33


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control7.301
SRR1783600control7.153
SRR1783602moderate drought stress3.587
SRR1811619moderate drought stress3.608

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.000
DRR006520Root Summer glycyrrhizin high producing strain0.000
DRR006521Root Winter glycyrrhizin high producing strain0.105
DRR006522Root Winter glycyrrhizin high producing strain0.102
DRR006523Root Summer glycyrrhizin low producing strain0.000
DRR006524Root Summer glycyrrhizin low producing strain0.000
DRR006525Leaf Summer glycyrrhizin high producing strain2.042
DRR006526Leaf Summer glycyrrhizin high producing strain2.047

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)7.731
SRR2868004Drought Stress(Tissue:root)9.961
SRR2967015Control (Tissue:root)3.764

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave9.293
SRR9715740Leave5.296
SRR9715741Leave9.580
SRR9715739Root34.097
SRR9715742Root15.658
SRR9715743Root19.147

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h4.268
SRR8749028MeJA induced 9h5.729
SRR8749029MeJA induced 9h14.055
SRR8749030Uninduced4.029
SRR8749031Uninduced7.490
SRR8749032Uninduced5.502

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root23.616
SRR8400027Control-Root20.602

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved