Gene detail information of Glyur000064s00005651.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G22680.1 | 6.00E-78 | myb domain protein 85 |
| NR | XP_003516672.1 | 6.91E-151 | PREDICTED: protein ODORANT1 [Glycine max] |
| Swissprot | tr|Q50EX6|ODO1_PETHY | 4.00E-103 | Protein ODORANT1 |
| trEMBL | tr|V7CGK8|V7CGK8_PHAVU | 9.00E-146 | Uncharacterized protein {ECO:0000313|EMBL:ESW29317.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00064 | 323921 | 326014 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | MYB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000064s00005651.1 | PF00249.26 | Myb_DNA-binding | 14 | 61 | 2.20E-13 |
| Glyur000064s00005651.1 | PF00249.26 | Myb_DNA-binding | 70 | 111 | 3.00E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.109 |
| SRR1783600 | control | 5.186 |
| SRR1783602 | moderate drought stress | 9.606 |
| SRR1811619 | moderate drought stress | 9.452 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.324 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.421 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.178 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.406 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.652 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.716 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 24.959 |
| SRR2868004 | Drought Stress(Tissue:root) | 39.924 |
| SRR2967015 | Control (Tissue:root) | 20.098 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.888 |
| SRR9715740 | Leave | 2.836 |
| SRR9715741 | Leave | 1.099 |
| SRR9715739 | Root | 16.867 |
| SRR9715742 | Root | 6.520 |
| SRR9715743 | Root | 8.256 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.469 |
| SRR8749028 | MeJA induced 9h | 0.998 |
| SRR8749029 | MeJA induced 9h | 0.376 |
| SRR8749030 | Uninduced | 0.565 |
| SRR8749031 | Uninduced | 0.321 |
| SRR8749032 | Uninduced | 0.063 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 27.464 |
| SRR8400027 | Control-Root | 22.706 |