Gene detail information of Glyur000064s00005652.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G12250.19.00E-73UDP-D-glucuronate 4-epimerase 5
NRXP_003611251.11.18E-115UDP-glucuronate 4-epimerase [Medicago truncatula]
COGYP_004010574.11.00E-44NAD-dependent epimerase/dehydratase [Rhodomicrobium vannielii ATCC 17100]
Swissprottr|O81312|GAE3_ARATH1.00E-104UDP-glucuronate 4-epimerase 3
trEMBLtr|G7KG81|G7KG81_MEDTR4.00E-116UDP-D-glucuronate 4-epimerase {ECO:0000313|EMBL:AES94209.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00064330818331570+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K08679E5.1.3.6 EC:5.1.3.6 Amino sugar and nucleotide sugar metabolism map00520


Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process


molecular_function

GO:0003824  catalytic activity

GO:0016857  racemase and epimerase activity, acting on carbohydrates and derivatives

GO:0050662  coenzyme binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000064s00005652.1PF01370.16Epimerase2681.20E-10


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control53.420
SRR1783600control51.249
SRR1783602moderate drought stress101.009
SRR1811619moderate drought stress97.492

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain54.946
DRR006520Root Summer glycyrrhizin high producing strain58.174
DRR006521Root Winter glycyrrhizin high producing strain40.886
DRR006522Root Winter glycyrrhizin high producing strain37.752
DRR006523Root Summer glycyrrhizin low producing strain62.442
DRR006524Root Summer glycyrrhizin low producing strain62.848
DRR006525Leaf Summer glycyrrhizin high producing strain20.551
DRR006526Leaf Summer glycyrrhizin high producing strain19.390

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)62.189
SRR2868004Drought Stress(Tissue:root)89.681
SRR2967015Control (Tissue:root)119.190

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave32.377
SRR9715740Leave35.453
SRR9715741Leave31.740
SRR9715739Root194.136
SRR9715742Root74.819
SRR9715743Root100.179

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h29.783
SRR8749028MeJA induced 9h33.206
SRR8749029MeJA induced 9h27.437
SRR8749030Uninduced14.983
SRR8749031Uninduced10.155
SRR8749032Uninduced18.805

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root60.474
SRR8400027Control-Root64.478

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved