Gene detail information of Glyur000065s00004262.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G18860.1 | 0 | transducin family protein / WD-40 repeat family protein |
| NR | XP_003541081.1 | 0 | PREDICTED: phospholipase A-2-activating protein-like [Glycine max] |
| COG | YP_005072249.1 | 4.00E-12 | WD-40 repeat protein [Arthrospira platensis NIES-39] |
| Swissprot | tr|Q8RXA7|SCD1_ARATH | 3.00E-08 | DENN domain and WD repeat-containing protein SCD1 {ECO:0000305} |
| trEMBL | tr|I1LQ62|I1LQ62_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G04990.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00065 | 27231 | 41260 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000065s00004262.1 | PF00400.27 | WD40 | 51 | 83 | 1.40E-06 |
| Glyur000065s00004262.1 | PF00400.27 | WD40 | 92 | 134 | 0.00032 |
| Glyur000065s00004262.1 | PF00400.27 | WD40 | 219 | 248 | 0.033 |
| Glyur000065s00004262.1 | PF09070.6 | PFU | 321 | 374 | 8.30E-11 |
| Glyur000065s00004262.1 | PF09070.6 | PFU | 375 | 411 | 3.80E-07 |
| Glyur000065s00004262.1 | PF08324.6 | PUL | 437 | 567 | 1.10E-24 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.448 |
| SRR1783600 | control | 6.935 |
| SRR1783602 | moderate drought stress | 6.402 |
| SRR1811619 | moderate drought stress | 5.996 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.969 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.144 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.692 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 8.631 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 10.365 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.543 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.521 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.391 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 14.567 |
| SRR2868004 | Drought Stress(Tissue:root) | 15.400 |
| SRR2967015 | Control (Tissue:root) | 13.592 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 4.055 |
| SRR9715740 | Leave | 4.004 |
| SRR9715741 | Leave | 4.081 |
| SRR9715739 | Root | 1.593 |
| SRR9715742 | Root | 4.510 |
| SRR9715743 | Root | 4.084 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.927 |
| SRR8749028 | MeJA induced 9h | 11.497 |
| SRR8749029 | MeJA induced 9h | 5.149 |
| SRR8749030 | Uninduced | 3.928 |
| SRR8749031 | Uninduced | 3.060 |
| SRR8749032 | Uninduced | 2.181 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 9.803 |
| SRR8400027 | Control-Root | 10.663 |