Gene detail information of Glyur000065s00004264.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G34350.104-hydroxy-3-methylbut-2-enyl diphosphate reductase
NRXP_004507401.10PREDICTED: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic-like [Cicer arietinum]
COGYP_007092789.104-hydroxy-3-methylbut-2-enyl diphosphate reductase [Chroococcidiopsis thermalis PCC 7203]
Swissprottr|Q94B35|ISPH_ARATH04-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic (Precursor)
trEMBLtr|A0A075EAU0|A0A075EAU0_ASTME0(E)-4-hydroxy-3-methylbut-2-enyl diphosphate reductase {ECO:0000313|EMBL:AID51433.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold000654720751468-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K03527ispH, lytB EC:1.17.7.4 Terpenoid backbone biosynthesis map00900


Gene Ontology

biological_process

GO:0019288  isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway

GO:0050992  dimethylallyl diphosphate biosynthetic process


molecular_function

GO:0046872  metal ion binding

GO:0051745  4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000065s00004264.1PF02401.13LYTB954361.50E-87


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control35.498
SRR1783600control36.013
SRR1783602moderate drought stress37.789
SRR1811619moderate drought stress37.708

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain35.102
DRR006520Root Summer glycyrrhizin high producing strain34.852
DRR006521Root Winter glycyrrhizin high producing strain38.171
DRR006522Root Winter glycyrrhizin high producing strain37.344
DRR006523Root Summer glycyrrhizin low producing strain46.317
DRR006524Root Summer glycyrrhizin low producing strain47.365
DRR006525Leaf Summer glycyrrhizin high producing strain171.970
DRR006526Leaf Summer glycyrrhizin high producing strain171.404

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)162.137
SRR2868004Drought Stress(Tissue:root)297.899
SRR2967015Control (Tissue:root)199.283

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave433.773
SRR9715740Leave598.352
SRR9715741Leave477.649
SRR9715739Root9.651
SRR9715742Root44.776
SRR9715743Root37.110

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h73.239
SRR8749028MeJA induced 9h135.191
SRR8749029MeJA induced 9h111.953
SRR8749030Uninduced344.476
SRR8749031Uninduced718.014
SRR8749032Uninduced378.708

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root174.153
SRR8400027Control-Root130.377

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved