Gene detail information of Glyur000065s00004288.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G18930.2 | 3.00E-52 | RING/U-box superfamily protein |
| NR | XP_004502661.1 | 1.34E-166 | PREDICTED: RING-H2 finger protein ATL65-like [Cicer arietinum] |
| Swissprot | tr|Q67YI6|ATL65_ARATH | 1.00E-97 | RING-H2 finger protein ATL65 |
| trEMBL | tr|I1LJJ0|I1LJJ0_SOYBN | 7.00E-157 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G13040.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00065 | 163051 | 164271 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000065s00004288.1 | PF13639.1 | zf-RING_2 | 152 | 195 | 2.90E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.807 |
| SRR1783600 | control | 2.760 |
| SRR1783602 | moderate drought stress | 4.241 |
| SRR1811619 | moderate drought stress | 4.214 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.385 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.600 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 54.380 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 52.695 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 14.894 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 14.655 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.797 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.730 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 8.761 |
| SRR2868004 | Drought Stress(Tissue:root) | 9.776 |
| SRR2967015 | Control (Tissue:root) | 7.481 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 11.070 |
| SRR9715740 | Leave | 7.951 |
| SRR9715741 | Leave | 13.265 |
| SRR9715739 | Root | 38.068 |
| SRR9715742 | Root | 41.334 |
| SRR9715743 | Root | 40.603 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 30.811 |
| SRR8749028 | MeJA induced 9h | 34.531 |
| SRR8749029 | MeJA induced 9h | 27.250 |
| SRR8749030 | Uninduced | 13.031 |
| SRR8749031 | Uninduced | 4.618 |
| SRR8749032 | Uninduced | 15.618 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 13.662 |
| SRR8400027 | Control-Root | 15.401 |