Gene detail information of Glyur000065s00004290.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G49430.10long-chain acyl-CoA synthetase 2
NRXP_004507386.10PREDICTED: long chain acyl-CoA synthetase 2-like isoform X2 [Cicer arietinum]
COGYP_006526432.12.00E-80Long-chain acyl-CoA synthetase [Melioribacter roseus P3M-2]
Swissprottr|Q9XIA9|LACS2_ARATH0Long chain acyl-CoA synthetase 2
trEMBLtr|A0A072UX04|A0A072UX04_MEDTR0Long-chain fatty acyl CoA ligase {ECO:0000313|EMBL:KEH30360.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00065170584177966+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01897ACSL, fadD EC:6.2.1.3 Fatty acid metabolism map01212
Fatty acid biosynthesismap00061
Fatty acid degradationmap00071
Peroxisomemap04146
Quorum sensingmap02024
Adipocytokine signaling pathwaymap04920
PPAR signaling pathwaymap03320


Gene Ontology

biological_process

GO:0008152  metabolic process


molecular_function

GO:0003824  catalytic activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000065s00004290.1PF00501.23AMP-binding515216.30E-96


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control2.851
SRR1783600control2.718
SRR1783602moderate drought stress3.378
SRR1811619moderate drought stress3.465

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain3.525
DRR006520Root Summer glycyrrhizin high producing strain3.155
DRR006521Root Winter glycyrrhizin high producing strain2.017
DRR006522Root Winter glycyrrhizin high producing strain2.009
DRR006523Root Summer glycyrrhizin low producing strain1.661
DRR006524Root Summer glycyrrhizin low producing strain1.623
DRR006525Leaf Summer glycyrrhizin high producing strain30.707
DRR006526Leaf Summer glycyrrhizin high producing strain29.409

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)4.756
SRR2868004Drought Stress(Tissue:root)3.644
SRR2967015Control (Tissue:root)2.232

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave24.313
SRR9715740Leave11.589
SRR9715741Leave21.995
SRR9715739Root0.585
SRR9715742Root2.112
SRR9715743Root2.428

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h5.096
SRR8749028MeJA induced 9h4.532
SRR8749029MeJA induced 9h4.027
SRR8749030Uninduced2.510
SRR8749031Uninduced1.716
SRR8749032Uninduced2.436

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root8.952
SRR8400027Control-Root13.274

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved