Gene detail information of Glyur000065s00004302.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G15630.10Pentatricopeptide repeat (PPR) superfamily protein
NRXP_007161634.10hypothetical protein PHAVU_001G085800g [Phaseolus vulgaris]
Swissprottr|Q9ZQF1|PP152_ARATH0Pentatricopeptide repeat-containing protein At2g15630, mitochondrial (Precursor)
trEMBLtr|V7CW75|V7CW75_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW33628.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00065279407281278+


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGT1


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000065s00004302.1PF01535.15PPR1521801.20E-05
Glyur000065s00004302.1PF13041.1PPR_21832314.30E-09
Glyur000065s00004302.1PF13041.1PPR_22523014.80E-19
Glyur000065s00004302.1PF13041.1PPR_23223696.40E-14
Glyur000065s00004302.1PF13041.1PPR_23924361.70E-17
Glyur000065s00004302.1PF12854.2PPR_14584904.40E-12
Glyur000065s00004302.1PF13041.1PPR_24975431.90E-19
Glyur000065s00004302.1PF13041.1PPR_25676139.10E-13


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control1.470
SRR1783600control1.515
SRR1783602moderate drought stress1.850
SRR1811619moderate drought stress1.857

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain1.457
DRR006520Root Summer glycyrrhizin high producing strain1.327
DRR006521Root Winter glycyrrhizin high producing strain0.774
DRR006522Root Winter glycyrrhizin high producing strain0.625
DRR006523Root Summer glycyrrhizin low producing strain3.280
DRR006524Root Summer glycyrrhizin low producing strain3.061
DRR006525Leaf Summer glycyrrhizin high producing strain0.744
DRR006526Leaf Summer glycyrrhizin high producing strain0.742

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)1.364
SRR2868004Drought Stress(Tissue:root)1.852
SRR2967015Control (Tissue:root)1.652

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.612
SRR9715740Leave0.282
SRR9715741Leave0.548
SRR9715739Root1.570
SRR9715742Root1.379
SRR9715743Root1.265

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h2.950
SRR8749028MeJA induced 9h2.188
SRR8749029MeJA induced 9h1.770
SRR8749030Uninduced0.328
SRR8749031Uninduced0.249
SRR8749032Uninduced0.428

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root2.239
SRR8400027Control-Root2.135

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved