Gene detail information of Glyur000065s00004305.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G04710.12.00E-15peroxisomal 3-ketoacyl-CoA thiolase 4
NRXP_003627370.14.09E-39ABC transporter B family member [Medicago truncatula]
COGYP_008155088.11.00E-08acetyl-CoA acetyltransferase [Sorangium cellulosum So0157-2]
Swissprottr|Q8LF48|THIK1_ARATH3.00E-163-ketoacyl-CoA thiolase 1, peroxisomal (Precursor)
trEMBLtr|G7L8C5|G7L8C5_MEDTR2.00E-39ABC transporter B family-like protein {ECO:0000313|EMBL:AET01846.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00065294739296346-


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K05658ABCB1, CD243 EC:3.6.3.44 ABC transporters map02010
Bile secretionmap04976
MicroRNAs in cancermap05206


Gene Ontology

biological_process

GO:0006810  transport

GO:0008152  metabolic process

GO:0055085  transmembrane transport


cellular_component

GO:0016021  integral component of membrane


molecular_function

GO:0003824  catalytic activity

GO:0005524  ATP binding

GO:0016747  transferase activity, transferring acyl groups other than amino-acyl groups

GO:0042626  ATPase activity, coupled to transmembrane movement of substances

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000065s00004305.1PF00664.18ABC_membrane51064.90E-10
Glyur000065s00004305.1PF02803.13Thiolase_C2062683.70E-10


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.055
SRR1783600control0.016
SRR1783602moderate drought stress0.104
SRR1811619moderate drought stress0.093

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.000
DRR006520Root Summer glycyrrhizin high producing strain0.000
DRR006521Root Winter glycyrrhizin high producing strain0.000
DRR006522Root Winter glycyrrhizin high producing strain0.008
DRR006523Root Summer glycyrrhizin low producing strain0.176
DRR006524Root Summer glycyrrhizin low producing strain0.193
DRR006525Leaf Summer glycyrrhizin high producing strain0.221
DRR006526Leaf Summer glycyrrhizin high producing strain0.189

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)0.379
SRR2868004Drought Stress(Tissue:root)0.480
SRR2967015Control (Tissue:root)0.572

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.000
SRR9715740Leave0.005
SRR9715741Leave0.037
SRR9715739Root0.000
SRR9715742Root0.051
SRR9715743Root0.000

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.113
SRR8749028MeJA induced 9h0.128
SRR8749029MeJA induced 9h0.044
SRR8749030Uninduced0.107
SRR8749031Uninduced0.099
SRR8749032Uninduced0.065

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root0.123
SRR8400027Control-Root0.021

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved