Gene detail information of Glyur000065s00004306.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G18990.1 | 2.00E-75 | AP2/B3-like transcriptional factor family protein |
| NR | XP_004507369.1 | 0 | PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X2 [Cicer arietinum] |
| Swissprot | tr|Q8L3W1|VRN1_ARATH | 2.00E-108 | B3 domain-containing transcription factor VRN1 |
| trEMBL | tr|V7AF48|V7AF48_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW03900.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00065 | 300006 | 301325 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | B3 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000065s00004306.1 | PF02362.16 | B3 | 268 | 359 | 1.80E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.749 |
| SRR1783600 | control | 5.923 |
| SRR1783602 | moderate drought stress | 8.723 |
| SRR1811619 | moderate drought stress | 7.376 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.327 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 9.766 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 10.665 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.130 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 14.591 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 14.496 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.802 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.674 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 12.195 |
| SRR2868004 | Drought Stress(Tissue:root) | 11.491 |
| SRR2967015 | Control (Tissue:root) | 12.293 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 4.031 |
| SRR9715740 | Leave | 4.671 |
| SRR9715741 | Leave | 7.667 |
| SRR9715739 | Root | 2.967 |
| SRR9715742 | Root | 5.819 |
| SRR9715743 | Root | 6.222 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 12.002 |
| SRR8749028 | MeJA induced 9h | 5.733 |
| SRR8749029 | MeJA induced 9h | 8.232 |
| SRR8749030 | Uninduced | 2.919 |
| SRR8749031 | Uninduced | 2.551 |
| SRR8749032 | Uninduced | 4.684 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 10.913 |
| SRR8400027 | Control-Root | 10.218 |