Gene detail information of Glyur000065s00004308.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G18990.14.00E-88AP2/B3-like transcriptional factor family protein
NRXP_004507369.10PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X2 [Cicer arietinum]
Swissprottr|Q8L3W1|VRN1_ARATH3.00E-122B3 domain-containing transcription factor VRN1
trEMBLtr|V7AEE9|V7AEE9_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW03899.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00065304338308107-


Gene family

Gene familysubfamily
Transcription Factors FamilyB3


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0003677  DNA binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000065s00004308.1PF02362.16B37942.80E-10
Glyur000065s00004308.1PF02362.16B32963872.20E-15


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control19.485
SRR1783600control19.142
SRR1783602moderate drought stress23.985
SRR1811619moderate drought stress24.908

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain14.657
DRR006520Root Summer glycyrrhizin high producing strain14.919
DRR006521Root Winter glycyrrhizin high producing strain14.696
DRR006522Root Winter glycyrrhizin high producing strain14.500
DRR006523Root Summer glycyrrhizin low producing strain17.802
DRR006524Root Summer glycyrrhizin low producing strain17.222
DRR006525Leaf Summer glycyrrhizin high producing strain5.630
DRR006526Leaf Summer glycyrrhizin high producing strain5.678

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)44.087
SRR2868004Drought Stress(Tissue:root)51.637
SRR2967015Control (Tissue:root)57.500

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave16.251
SRR9715740Leave20.181
SRR9715741Leave22.294
SRR9715739Root11.442
SRR9715742Root23.690
SRR9715743Root20.223

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h45.080
SRR8749028MeJA induced 9h28.058
SRR8749029MeJA induced 9h34.082
SRR8749030Uninduced12.082
SRR8749031Uninduced11.970
SRR8749032Uninduced11.835

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root44.349
SRR8400027Control-Root41.758

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved