Gene detail information of Glyur000065s00004324.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G43500.2 | 0 | Plant regulator RWP-RK family protein |
| NR | XP_006592131.1 | 0 | PREDICTED: protein NLP8-like [Glycine max] |
| Swissprot | tr|O22864|NLP8_ARATH | 0 | Protein NLP8 |
| trEMBL | tr|I1LQB5|I1LQB5_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G05390.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00065 | 377514 | 382293 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | RWP-RK |
| EAR motif-containing Proteins | RWP-RK |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000065s00004324.1 | PF02042.10 | RWP-RK | 594 | 644 | 1.30E-26 |
| Glyur000065s00004324.1 | PF00564.19 | PB1 | 886 | 965 | 6.30E-17 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.904 |
| SRR1783600 | control | 0.952 |
| SRR1783602 | moderate drought stress | 1.250 |
| SRR1811619 | moderate drought stress | 1.232 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.699 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.690 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.631 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.607 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.859 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.935 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.661 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.662 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 3.525 |
| SRR2868004 | Drought Stress(Tissue:root) | 4.077 |
| SRR2967015 | Control (Tissue:root) | 3.806 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 3.321 |
| SRR9715740 | Leave | 4.739 |
| SRR9715741 | Leave | 2.720 |
| SRR9715739 | Root | 0.375 |
| SRR9715742 | Root | 0.971 |
| SRR9715743 | Root | 1.014 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.389 |
| SRR8749028 | MeJA induced 9h | 0.227 |
| SRR8749029 | MeJA induced 9h | 0.278 |
| SRR8749030 | Uninduced | 0.108 |
| SRR8749031 | Uninduced | 0.183 |
| SRR8749032 | Uninduced | 0.059 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 9.427 |
| SRR8400027 | Control-Root | 7.716 |