Gene detail information of Glyur000066s00006208.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G54810.23.00E-32Plant-specific GATA-type zinc finger transcription factor family protein
NRXP_003540186.15.50E-148PREDICTED: GATA transcription factor 11-like [Glycine max]
Swissprottr|Q6DBP8|GAT11_ARATH2.00E-52GATA transcription factor 11
trEMBLtr|I1LTK1|I1LTK1_SOYBN2.00E-148Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G29730.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold000666075764563+


Gene family

Gene familysubfamily
Transcription Factors FamilyC2C2-GATA


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0006355  regulation of transcription, DNA-templated


molecular_function

GO:0003700  transcription factor activity, sequence-specific DNA binding

GO:0008270  zinc ion binding

GO:0043565  sequence-specific DNA binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000066s00006208.1PF00320.22GATA2392722.80E-16


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control22.856
SRR1783600control22.819
SRR1783602moderate drought stress10.978
SRR1811619moderate drought stress10.872

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain11.672
DRR006520Root Summer glycyrrhizin high producing strain11.306
DRR006521Root Winter glycyrrhizin high producing strain3.672
DRR006522Root Winter glycyrrhizin high producing strain3.545
DRR006523Root Summer glycyrrhizin low producing strain11.100
DRR006524Root Summer glycyrrhizin low producing strain10.972
DRR006525Leaf Summer glycyrrhizin high producing strain6.593
DRR006526Leaf Summer glycyrrhizin high producing strain6.485

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)36.592
SRR2868004Drought Stress(Tissue:root)19.241
SRR2967015Control (Tissue:root)20.340

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave9.585
SRR9715740Leave5.308
SRR9715741Leave5.621
SRR9715739Root8.143
SRR9715742Root11.727
SRR9715743Root10.443

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h27.168
SRR8749028MeJA induced 9h26.798
SRR8749029MeJA induced 9h28.568
SRR8749030Uninduced8.430
SRR8749031Uninduced4.733
SRR8749032Uninduced6.813

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root26.854
SRR8400027Control-Root31.415

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved