Gene detail information of Glyur000066s00006213.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G60690.1 | 0 | Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein |
| NR | DAA05766.1 | 0 | TPA: TPA_inf: class III HD-Zip protein REV1 [Lotus japonicus] |
| Swissprot | tr|Q9SE43|REV_ARATH | 0 | Homeobox-leucine zipper protein REVOLUTA |
| trEMBL | tr|Q147T3|Q147T3_LOTJA | 0 | Class III HD-Zip protein REV1 {ECO:0000313|EMBL:DAA05766.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00066 | 109986 | 117303 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | HB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000066s00006213.1 | PF00046.24 | Homeobox | 22 | 80 | 1.50E-15 |
| Glyur000066s00006213.1 | PF01852.14 | START | 164 | 369 | 3.20E-44 |
| Glyur000066s00006213.1 | PF08670.6 | MEKHLA | 710 | 817 | 8.90E-48 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.773 |
| SRR1783600 | control | 4.846 |
| SRR1783602 | moderate drought stress | 6.102 |
| SRR1811619 | moderate drought stress | 5.883 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 13.914 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 13.994 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 11.914 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 11.503 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.974 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.583 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.546 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.667 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 28.227 |
| SRR2868004 | Drought Stress(Tissue:root) | 32.464 |
| SRR2967015 | Control (Tissue:root) | 31.044 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 5.879 |
| SRR9715740 | Leave | 5.641 |
| SRR9715741 | Leave | 6.157 |
| SRR9715739 | Root | 3.027 |
| SRR9715742 | Root | 19.731 |
| SRR9715743 | Root | 15.853 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 25.511 |
| SRR8749028 | MeJA induced 9h | 21.632 |
| SRR8749029 | MeJA induced 9h | 13.788 |
| SRR8749030 | Uninduced | 3.791 |
| SRR8749031 | Uninduced | 0.774 |
| SRR8749032 | Uninduced | 2.575 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 26.329 |
| SRR8400027 | Control-Root | 23.871 |