Gene detail information of Glyur000066s00006230.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G60600.104-hydroxy-3-methylbut-2-enyl diphosphate synthase
NRXP_003540178.10PREDICTED: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, chloroplastic-like isoform X1 [Glycine max]
COGYP_004653042.104-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase [Parachlamydia acanthamoebae UV-7]
Swissprottr|F4K0E8|ISPG_ARATH04-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, chloroplastic (Precursor)
trEMBLtr|K7LVH5|K7LVH5_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G29590.4}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00066180705186786-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K03526gcpE, ispG EC:1.17.7.1 1.17.7.3 Terpenoid backbone biosynthesis map00900


Gene Ontology

biological_process

GO:0008299  isoprenoid biosynthetic process

GO:0016114  terpenoid biosynthetic process

GO:0055114  oxidation-reduction process


molecular_function

GO:0005506  iron ion binding

GO:0046429  4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000066s00006230.1PF04551.9GcpE1357771.40E-158


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control63.036
SRR1783600control63.088
SRR1783602moderate drought stress52.168
SRR1811619moderate drought stress51.828

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain21.005
DRR006520Root Summer glycyrrhizin high producing strain20.740
DRR006521Root Winter glycyrrhizin high producing strain27.490
DRR006522Root Winter glycyrrhizin high producing strain26.660
DRR006523Root Summer glycyrrhizin low producing strain23.019
DRR006524Root Summer glycyrrhizin low producing strain22.657
DRR006525Leaf Summer glycyrrhizin high producing strain55.430
DRR006526Leaf Summer glycyrrhizin high producing strain54.508

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)147.354
SRR2868004Drought Stress(Tissue:root)321.153
SRR2967015Control (Tissue:root)231.461

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave144.094
SRR9715740Leave198.881
SRR9715741Leave152.654
SRR9715739Root57.310
SRR9715742Root91.594
SRR9715743Root84.579

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h11.815
SRR8749028MeJA induced 9h42.624
SRR8749029MeJA induced 9h15.862
SRR8749030Uninduced114.083
SRR8749031Uninduced105.696
SRR8749032Uninduced57.292

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root242.269
SRR8400027Control-Root165.840

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved