Gene detail information of Glyur000066s00006232.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G60570.13.00E-157Galactose oxidase/kelch repeat superfamily protein
NRXP_003543480.10PREDICTED: F-box/kelch-repeat protein At5g60570-like isoform X1 [Glycine max]
COGYP_003393273.11.00E-11Kelch repeat-containing protein [Conexibacter woesei DSM 14684]
Swissprottr|Q9FKJ0|FK132_ARATH0F-box/kelch-repeat protein At5g60570
trEMBLtr|I1M4L4|I1M4L4_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G40180.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00066200714201814-


Gene family

Gene familysubfamily
Ubiquitin FamilyF-box


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000066s00006232.1PF01344.20Kelch_11521974.10E-08
Glyur000066s00006232.1PF01344.20Kelch_12002456.00E-07


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control18.730
SRR1783600control18.044
SRR1783602moderate drought stress15.774
SRR1811619moderate drought stress16.164

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain24.821
DRR006520Root Summer glycyrrhizin high producing strain23.713
DRR006521Root Winter glycyrrhizin high producing strain48.892
DRR006522Root Winter glycyrrhizin high producing strain47.583
DRR006523Root Summer glycyrrhizin low producing strain34.007
DRR006524Root Summer glycyrrhizin low producing strain33.777
DRR006525Leaf Summer glycyrrhizin high producing strain41.236
DRR006526Leaf Summer glycyrrhizin high producing strain41.535

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)102.260
SRR2868004Drought Stress(Tissue:root)111.561
SRR2967015Control (Tissue:root)115.833

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave75.833
SRR9715740Leave66.080
SRR9715741Leave95.302
SRR9715739Root26.312
SRR9715742Root52.702
SRR9715743Root54.626

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h69.926
SRR8749028MeJA induced 9h170.571
SRR8749029MeJA induced 9h57.665
SRR8749030Uninduced301.307
SRR8749031Uninduced218.381
SRR8749032Uninduced141.757

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root67.953
SRR8400027Control-Root48.219

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved