Gene detail information of Glyur000066s00006248.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G45260.1 | 2.00E-80 | C2H2-like zinc finger protein |
| NR | XP_003540171.1 | 2.43E-158 | PREDICTED: zinc finger protein JACKDAW-like [Glycine max] |
| Swissprot | tr|Q944L3|IDD9_ARATH | 4.00E-106 | Protein indeterminate-domain 9 {ECO:0000303|PubMed:16784536} |
| trEMBL | tr|K7LVG2|K7LVG2_SOYBN | 9.00E-159 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G29370.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00066 | 252723 | 255982 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2H2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 74.518 |
| SRR1783600 | control | 74.882 |
| SRR1783602 | moderate drought stress | 104.488 |
| SRR1811619 | moderate drought stress | 103.881 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 43.697 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 43.176 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 87.687 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 86.443 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 38.906 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 39.322 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 52.008 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 51.058 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 2.838 |
| SRR2868004 | Drought Stress(Tissue:root) | 2.157 |
| SRR2967015 | Control (Tissue:root) | 3.139 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 29.956 |
| SRR9715740 | Leave | 30.089 |
| SRR9715741 | Leave | 27.404 |
| SRR9715739 | Root | 6.773 |
| SRR9715742 | Root | 25.632 |
| SRR9715743 | Root | 21.344 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.583 |
| SRR8749028 | MeJA induced 9h | 0.165 |
| SRR8749029 | MeJA induced 9h | 1.014 |
| SRR8749030 | Uninduced | 0.216 |
| SRR8749031 | Uninduced | 0.406 |
| SRR8749032 | Uninduced | 1.811 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 22.579 |
| SRR8400027 | Control-Root | 35.958 |