Gene detail information of Glyur000066s00006252.3 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G60450.1 | 1.00E-152 | auxin response factor 4 |
| NR | KHN21534.1 | 0 | Auxin response factor 4 [Glycine soja] |
| Swissprot | tr|Q9ZTX9|ARFD_ARATH | 7.00E-180 | Auxin response factor 4 |
| trEMBL | tr|I1M4M7|I1M4M7_SOYBN | 0 | Auxin response factor {ECO:0000256|RuleBase:RU004561} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00066 | 295093 | 300448 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | AUX/IAA |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000066s00006252.3 | PF02309.11 | AUX_IAA | 1 | 87 | 1.00E-22 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.613 |
| SRR1783600 | control | 5.632 |
| SRR1783602 | moderate drought stress | 7.649 |
| SRR1811619 | moderate drought stress | 7.837 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.532 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.291 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.331 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.330 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 12.358 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.460 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.315 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.250 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 19.019 |
| SRR2868004 | Drought Stress(Tissue:root) | 20.083 |
| SRR2967015 | Control (Tissue:root) | 30.544 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 2.708 |
| SRR9715740 | Leave | 4.399 |
| SRR9715741 | Leave | 1.976 |
| SRR9715739 | Root | 1.187 |
| SRR9715742 | Root | 6.360 |
| SRR9715743 | Root | 5.448 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.142 |
| SRR8749028 | MeJA induced 9h | 0.031 |
| SRR8749029 | MeJA induced 9h | 0.084 |
| SRR8749030 | Uninduced | 0.122 |
| SRR8749031 | Uninduced | 0.117 |
| SRR8749032 | Uninduced | 0.081 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 16.472 |
| SRR8400027 | Control-Root | 16.588 |