Gene detail information of Glyur000066s00006253.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G60410.10DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain
NRXP_004487135.10PREDICTED: E3 SUMO-protein ligase SIZ1-like isoform X1 [Cicer arietinum]
Swissprottr|Q680Q4|SIZ1_ARATH0E3 SUMO-protein ligase SIZ1
trEMBLtr|Q2HSV7|Q2HSV7_MEDTR0E3 SUMO-protein ligase SIZ1 {ECO:0000313|EMBL:AES67441.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00066301200311690-


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000066s00006253.1PF02037.22SAP12421.80E-08
Glyur000066s00006253.1PF02891.15zf-MIZ3594074.90E-19


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control19.527
SRR1783600control19.777
SRR1783602moderate drought stress25.667
SRR1811619moderate drought stress25.515

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain21.613
DRR006520Root Summer glycyrrhizin high producing strain21.271
DRR006521Root Winter glycyrrhizin high producing strain13.244
DRR006522Root Winter glycyrrhizin high producing strain13.370
DRR006523Root Summer glycyrrhizin low producing strain23.960
DRR006524Root Summer glycyrrhizin low producing strain23.722
DRR006525Leaf Summer glycyrrhizin high producing strain11.184
DRR006526Leaf Summer glycyrrhizin high producing strain11.311

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)23.707
SRR2868004Drought Stress(Tissue:root)24.898
SRR2967015Control (Tissue:root)30.374

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave20.083
SRR9715740Leave18.067
SRR9715741Leave26.622
SRR9715739Root7.619
SRR9715742Root25.009
SRR9715743Root22.042

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h18.025
SRR8749028MeJA induced 9h30.438
SRR8749029MeJA induced 9h12.164
SRR8749030Uninduced15.367
SRR8749031Uninduced9.396
SRR8749032Uninduced8.758

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root31.642
SRR8400027Control-Root28.836

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved