Gene detail information of Glyur000066s00006258.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G07900.1 | 3.00E-53 | LOB domain-containing protein 1 |
| NR | XP_003542002.1 | 3.44E-113 | PREDICTED: LOB domain-containing protein 11-like [Glycine max] |
| Swissprot | tr|Q9LQR0|LBD1_ARATH | 2.00E-79 | LOB domain-containing protein 1 |
| trEMBL | tr|K7M386|K7M386_SOYBN | 1.00E-113 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G40370.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00066 | 346869 | 348222 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | LOB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000066s00006258.1 | PF03195.9 | DUF260 | 33 | 132 | 5.60E-40 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.551 |
| SRR1783600 | control | 4.567 |
| SRR1783602 | moderate drought stress | 2.370 |
| SRR1811619 | moderate drought stress | 2.511 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.944 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.784 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.407 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.062 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.652 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.569 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 3.610 |
| SRR2868004 | Drought Stress(Tissue:root) | 6.487 |
| SRR2967015 | Control (Tissue:root) | 2.964 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.223 |
| SRR9715740 | Leave | 4.074 |
| SRR9715741 | Leave | 2.012 |
| SRR9715739 | Root | 0.826 |
| SRR9715742 | Root | 1.895 |
| SRR9715743 | Root | 1.422 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 9.755 |
| SRR8749028 | MeJA induced 9h | 4.019 |
| SRR8749029 | MeJA induced 9h | 2.324 |
| SRR8749030 | Uninduced | 0.922 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 10.428 |
| SRR8400027 | Control-Root | 8.398 |