Gene detail information of Glyur000066s00006260.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G29900.10carbamoyl phosphate synthetase B
NRXP_004487142.10PREDICTED: carbamoyl-phosphate synthase large chain-like [Cicer arietinum]
COGYP_007065243.10carbamoyl-phosphate synthase large subunit [Calothrix sp. PCC 7507]
Swissprottr|Q42601|CARB_ARATH0Carbamoyl-phosphate synthase large chain, chloroplastic (Precursor)
trEMBLtr|G7IU57|G7IU57_MEDTR0Carbamoyl-phosphate synthase large chain {ECO:0000313|EMBL:AES67407.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00066360416365633-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01955carB, CPA2 EC:6.3.5.5 Pyrimidine metabolism map00240
Alanine, aspartate and glutamate metabolismmap00250


Gene Ontology

biological_process

GO:0006807  nitrogen compound metabolic process

GO:0008152  metabolic process


molecular_function

GO:0003824  catalytic activity

GO:0005524  ATP binding

GO:0046872  metal ion binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000066s00006260.1PF00289.17CPSase_L_chain872035.70E-22
Glyur000066s00006260.1PF02786.12CPSase_L_D22084146.10E-73
Glyur000066s00006260.1PF02787.14CPSase_L_D35046261.40E-40
Glyur000066s00006260.1PF00289.17CPSase_L_chain6377384.10E-19
Glyur000066s00006260.1PF02786.12CPSase_L_D27659679.10E-36
Glyur000066s00006260.1PF02142.17MGS105011363.40E-16


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control38.438
SRR1783600control38.401
SRR1783602moderate drought stress40.682
SRR1811619moderate drought stress40.523

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain31.009
DRR006520Root Summer glycyrrhizin high producing strain30.957
DRR006521Root Winter glycyrrhizin high producing strain7.523
DRR006522Root Winter glycyrrhizin high producing strain7.401
DRR006523Root Summer glycyrrhizin low producing strain21.470
DRR006524Root Summer glycyrrhizin low producing strain21.463
DRR006525Leaf Summer glycyrrhizin high producing strain10.107
DRR006526Leaf Summer glycyrrhizin high producing strain10.108

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)39.502
SRR2868004Drought Stress(Tissue:root)36.436
SRR2967015Control (Tissue:root)33.028

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave9.494
SRR9715740Leave6.363
SRR9715741Leave6.426
SRR9715739Root30.033
SRR9715742Root56.011
SRR9715743Root51.452

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h12.534
SRR8749028MeJA induced 9h11.399
SRR8749029MeJA induced 9h5.365
SRR8749030Uninduced0.818
SRR8749031Uninduced0.351
SRR8749032Uninduced0.782

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root48.003
SRR8400027Control-Root62.573

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved