Gene detail information of Glyur000066s00006268.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G45620.1 | 5.00E-173 | Transducin/WD40 repeat-like superfamily protein |
| NR | KHN33442.1 | 0 | DDB1- and CUL4-associated factor 8 [Glycine soja] |
| COG | YP_007090512.1 | 8.00E-10 | WD-40 repeat-containing protein [Chroococcidiopsis thermalis PCC 7203] |
| Swissprot | tr|Q3Y8L7|DAW1_CHLRE | 5.00E-06 | Dynein assembly factor with WDR repeat domains 1 |
| trEMBL | tr|I1MDM1|I1MDM1_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G04960.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00066 | 412735 | 415430 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000066s00006268.1 | PF00400.27 | WD40 | 57 | 90 | 1.00E-07 |
| Glyur000066s00006268.1 | PF00400.27 | WD40 | 144 | 180 | 0.025 |
| Glyur000066s00006268.1 | PF00400.27 | WD40 | 359 | 391 | 0.016 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 11.093 |
| SRR1783600 | control | 11.365 |
| SRR1783602 | moderate drought stress | 16.341 |
| SRR1811619 | moderate drought stress | 16.499 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 15.301 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 15.452 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 22.136 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 22.342 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 15.878 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 16.290 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.093 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.181 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 14.449 |
| SRR2868004 | Drought Stress(Tissue:root) | 18.350 |
| SRR2967015 | Control (Tissue:root) | 18.844 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 5.919 |
| SRR9715740 | Leave | 8.090 |
| SRR9715741 | Leave | 6.503 |
| SRR9715739 | Root | 4.048 |
| SRR9715742 | Root | 4.341 |
| SRR9715743 | Root | 5.619 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.711 |
| SRR8749028 | MeJA induced 9h | 10.474 |
| SRR8749029 | MeJA induced 9h | 5.177 |
| SRR8749030 | Uninduced | 5.119 |
| SRR8749031 | Uninduced | 2.978 |
| SRR8749032 | Uninduced | 2.519 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 14.697 |
| SRR8400027 | Control-Root | 11.550 |