Gene detail information of Glyur000067s00006340.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G16780.1 | 2.00E-81 | homeobox protein 2 |
| NR | XP_003549927.1 | 1.92E-171 | PREDICTED: homeobox-leucine zipper protein HAT4 [Glycine max] |
| Swissprot | tr|A5Y7H8|HAT4_ARATH | 8.00E-109 | Homeobox-leucine zipper protein HAT4 |
| trEMBL | tr|V7CEB5|V7CEB5_PHAVU | 2.00E-165 | Uncharacterized protein {ECO:0000313|EMBL:ESW27688.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00067 | 1717 | 3500 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | HB |
| EAR motif-containing Proteins | HB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000067s00006340.1 | PF04618.7 | HD-ZIP_N | 1 | 111 | 2.50E-29 |
| Glyur000067s00006340.1 | PF00046.24 | Homeobox | 138 | 192 | 2.10E-16 |
| Glyur000067s00006340.1 | PF02183.13 | HALZ | 194 | 237 | 7.00E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.744 |
| SRR1783600 | control | 4.755 |
| SRR1783602 | moderate drought stress | 3.025 |
| SRR1811619 | moderate drought stress | 3.079 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.215 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.114 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 14.195 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 15.070 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.023 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.965 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 28.995 |
| SRR2868004 | Drought Stress(Tissue:root) | 44.336 |
| SRR2967015 | Control (Tissue:root) | 39.781 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.940 |
| SRR9715740 | Leave | 1.533 |
| SRR9715741 | Leave | 0.778 |
| SRR9715739 | Root | 7.730 |
| SRR9715742 | Root | 8.612 |
| SRR9715743 | Root | 8.810 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 50.916 |
| SRR8749028 | MeJA induced 9h | 15.211 |
| SRR8749029 | MeJA induced 9h | 27.349 |
| SRR8749030 | Uninduced | 4.126 |
| SRR8749031 | Uninduced | 1.132 |
| SRR8749032 | Uninduced | 4.390 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 6.167 |
| SRR8400027 | Control-Root | 6.083 |