Gene detail information of Glyur000067s00006364.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G17040.12.00E-104CLP protease R subunit 4
NRXP_004508959.19.07E-173PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic-like [Cicer arietinum]
COGYP_007142087.15.00E-68ATP-dependent Clp protease proteolytic subunit [Crinalium epipsammum PCC 9333]
Swissprottr|Q8LB10|CLPR4_ARATH2.00E-145ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic (Precursor)
trEMBLtr|V7CEM3|V7CEM3_PHAVU6.00E-172ATP-dependent Clp protease proteolytic subunit {ECO:0000256|RuleBase:RU003567}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00067149434155177-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01358clpP, CLPP EC:3.4.21.92 Cell cycle - Caulobacter map04112
Longevity regulating pathway - wormmap04212


Gene Ontology

biological_process

GO:0006508  proteolysis


molecular_function

GO:0004252  serine-type endopeptidase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000067s00006364.1PF00574.18CLP_protease1012826.20E-51


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control68.492
SRR1783600control68.566
SRR1783602moderate drought stress54.248
SRR1811619moderate drought stress54.151

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain46.759
DRR006520Root Summer glycyrrhizin high producing strain45.717
DRR006521Root Winter glycyrrhizin high producing strain64.081
DRR006522Root Winter glycyrrhizin high producing strain61.905
DRR006523Root Summer glycyrrhizin low producing strain41.069
DRR006524Root Summer glycyrrhizin low producing strain41.125
DRR006525Leaf Summer glycyrrhizin high producing strain153.269
DRR006526Leaf Summer glycyrrhizin high producing strain152.977

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)46.353
SRR2868004Drought Stress(Tissue:root)42.677
SRR2967015Control (Tissue:root)41.144

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave77.024
SRR9715740Leave95.878
SRR9715741Leave91.120
SRR9715739Root22.301
SRR9715742Root29.949
SRR9715743Root23.858

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h64.762
SRR8749028MeJA induced 9h55.263
SRR8749029MeJA induced 9h60.425
SRR8749030Uninduced31.458
SRR8749031Uninduced31.413
SRR8749032Uninduced27.568

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root60.690
SRR8400027Control-Root58.507

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved