Gene detail information of Glyur000067s00006388.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G17090.10chloroplast beta-amylase
NRXP_003524296.10PREDICTED: beta-amylase 3, chloroplastic-like [Glycine max]
COGYP_004639885.14.00E-47thermophilic beta-amylase [Paenibacillus mucilaginosus KNP414]
Swissprottr|O23553|BAM3_ARATH0Beta-amylase 3, chloroplastic (Precursor)
trEMBLtr|I1K0Y6|I1K0Y6_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G05750.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00067269733273149-


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGH14


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01177E3.2.1.2 EC:3.2.1.2 Starch and sucrose metabolism map00500


Gene Ontology

biological_process

GO:0000272  polysaccharide catabolic process

GO:0005975  carbohydrate metabolic process


molecular_function

GO:0016161  beta-amylase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000067s00006388.1PF01373.12Glyco_hydro_14865034.30E-159


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control7.788
SRR1783600control7.968
SRR1783602moderate drought stress11.590
SRR1811619moderate drought stress11.490

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain13.295
DRR006520Root Summer glycyrrhizin high producing strain13.415
DRR006521Root Winter glycyrrhizin high producing strain4.091
DRR006522Root Winter glycyrrhizin high producing strain4.063
DRR006523Root Summer glycyrrhizin low producing strain31.796
DRR006524Root Summer glycyrrhizin low producing strain32.394
DRR006525Leaf Summer glycyrrhizin high producing strain14.530
DRR006526Leaf Summer glycyrrhizin high producing strain13.973

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)8.478
SRR2868004Drought Stress(Tissue:root)45.030
SRR2967015Control (Tissue:root)52.947

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave83.079
SRR9715740Leave43.903
SRR9715741Leave77.315
SRR9715739Root1.750
SRR9715742Root8.274
SRR9715743Root5.864

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h56.486
SRR8749028MeJA induced 9h46.559
SRR8749029MeJA induced 9h64.386
SRR8749030Uninduced59.389
SRR8749031Uninduced443.191
SRR8749032Uninduced215.145

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root26.006
SRR8400027Control-Root26.925

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved