Gene detail information of Glyur000068s00006809.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G21720.1 | 0 | isocitrate lyase |
| NR | KHN21248.1 | 0 | Isocitrate lyase 2 [Glycine soja] |
| COG | YP_002492134.1 | 3.00E-100 | isocitrate lyase [Anaeromyxobacter dehalogenans 2CP-1] |
| Swissprot | tr|P45457|ACEA2_SOYBN | 0 | Isocitrate lyase 2 (Fragment) |
| trEMBL | tr|B0M1A1|B0M1A1_SOYBN | 0 | Isocitrate lyase {ECO:0000256|PIRNR:PIRNR001362} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00068 | 25563 | 27373 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01637 | E4.1.3.1, aceA | EC:4.1.3.1 | Carbon metabolism | map01200 |
| Glyoxylate and dicarboxylate metabolism | map00630 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000068s00006809.1 | PF00463.16 | ICL | 10 | 527 | 1.70E-261 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.246 |
| SRR1783600 | control | 0.236 |
| SRR1783602 | moderate drought stress | 1.966 |
| SRR1811619 | moderate drought stress | 1.921 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.055 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.055 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.032 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.030 |
| SRR2967015 | Control (Tissue:root) | 0.029 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.188 |
| SRR9715740 | Leave | 0.038 |
| SRR9715741 | Leave | 0.053 |
| SRR9715739 | Root | 0.012 |
| SRR9715742 | Root | 0.322 |
| SRR9715743 | Root | 0.431 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 1.423 |
| SRR8400027 | Control-Root | 0.493 |