Gene detail information of Glyur000068s00006814.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G20570.12.00E-51RING-box 1
NRXP_007132561.17.45E-80hypothetical protein PHAVU_011G105100g [Phaseolus vulgaris]
Swissprottr|Q940X7|RBX1A_ARATH3.00E-69RING-box protein 1a
trEMBLtr|V7AH14|V7AH14_PHAVU3.00E-80Uncharacterized protein {ECO:0000313|EMBL:ESW04555.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold000685608458147-


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000068s00006814.1PF12678.2zf-rbx1291061.80E-35


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control125.265
SRR1783600control125.573
SRR1783602moderate drought stress148.234
SRR1811619moderate drought stress147.170

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain224.664
DRR006520Root Summer glycyrrhizin high producing strain220.854
DRR006521Root Winter glycyrrhizin high producing strain305.094
DRR006522Root Winter glycyrrhizin high producing strain296.963
DRR006523Root Summer glycyrrhizin low producing strain256.510
DRR006524Root Summer glycyrrhizin low producing strain255.054
DRR006525Leaf Summer glycyrrhizin high producing strain146.875
DRR006526Leaf Summer glycyrrhizin high producing strain146.241

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)139.553
SRR2868004Drought Stress(Tissue:root)140.765
SRR2967015Control (Tissue:root)156.867

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave132.580
SRR9715740Leave149.862
SRR9715741Leave137.365
SRR9715739Root228.219
SRR9715742Root137.350
SRR9715743Root146.982

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h254.164
SRR8749028MeJA induced 9h94.316
SRR8749029MeJA induced 9h211.946
SRR8749030Uninduced103.738
SRR8749031Uninduced78.887
SRR8749032Uninduced184.488

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root181.048
SRR8400027Control-Root162.031

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved